View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17853_low_1 (Length: 710)
Name: NF17853_low_1
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17853_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 58 - 682
Target Start/End: Complemental strand, 49016779 - 49016157
Alignment:
| Q |
58 |
ctaacaagggagagcaggtgtttaatttaagaaatgtatttatgaactacattgtcgtgaaatcttggagattatgcctcgctataaccatcaacaggcc |
157 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49016779 |
ctaacaagggagagcaggtgtttaatttaagaaatgtatttatgaactacattgtcgtgaaatcttggagattatgcctcgctataaccatcaacaagcc |
49016680 |
T |
|
| Q |
158 |
actctatcatagctcgtccttggtatgtttttcttctttggtgttaacagcacgcctacaaacccttgcatccttataaatcctgcctggtctacagaag |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49016679 |
actctatcatagctcgtccttggtatgtttttcttcttaggtgttaacaccacgcctacaaacccttgcatccttataaatcctgcctggtctacagaag |
49016580 |
T |
|
| Q |
258 |
taacggtttttcggtgcacagtgagtatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaa |
357 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49016579 |
taactgtttttcggtgcacagtgagtatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaa |
49016480 |
T |
|
| Q |
358 |
gcacttggtttgtccactcactagagaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatggattgctcc |
457 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49016479 |
gcacttggtttgtccactcactagagaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttacggattgctcc |
49016380 |
T |
|
| Q |
458 |
cacaaatcctaagtttctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagccta |
557 |
Q |
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| T |
49016379 |
cacaaatcctaagtttctatttttcccccaatgtggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagccta |
49016280 |
T |
|
| Q |
558 |
ggagtcaatggatctttactacggtaatatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataa |
657 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49016279 |
ggagtcaatggatctttactacggtaatatgtgatgtcgaaatccacagcat--tctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataa |
49016182 |
T |
|
| Q |
658 |
ggattccattgtatagatctaagcc |
682 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
49016181 |
ggattccattgtatagatctaagcc |
49016157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 185 - 685
Target Start/End: Original strand, 490102 - 490602
Alignment:
| Q |
185 |
tttttcttctttggtgttaacagcacgcctacaaacccttgcatccttataaatcctgcctggtctacagaagtaacggtttttcggtgcacagtgagta |
284 |
Q |
| |
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||||||||||| || |||||| | ||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| |||| ||| ||| || |
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| T |
490102 |
tttttcttcttaagttttaacatgaagcctacaaacccttgcatccttatagattctgcctggtctgcagaagtagttcttttttggtgaacaatgacta |
490201 |
T |
|
| Q |
285 |
tcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactagaga |
384 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
490202 |
tcttttgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtctgtccaatcactagaga |
490301 |
T |
|
| Q |
385 |
aaagacctcgt-gaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatggattgctcccacaaatcctaagtttctatttttcc |
483 |
Q |
| |
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|||| | || | | ||||| | | |||||||||||||||| || ||| || ||||| || | ||||| ||||||||||||| ||||||||||| | |
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| T |
490302 |
aaagtc-tcttcgggtcatatttctttttaaccttcaaaaacctatttgccttattatatttttttattgcccccacaaatcctatatttctattttttc |
490400 |
T |
|
| Q |
484 |
cccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctttactacggta |
583 |
Q |
| |
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||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| |
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| T |
490401 |
cccaatggggtaaccctccatatttgaacaatcctatttgttctatctcttcaattatatcttcataaagcctaggagtcaatggatctttactgcggta |
490500 |
T |
|
| Q |
584 |
atatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccattgtatagatctaagcca |
683 |
Q |
| |
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|||| ||||||| || | ||||||||| ||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||| | ||||||||| |
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| T |
490501 |
atatatgatgtcaaattccacagcatcttctgtttttcccaagtatgcactagaagttgtaacataacgcatgaggattccattgtacaagtctaagcca |
490600 |
T |
|
| Q |
684 |
ca |
685 |
Q |
| |
|
|| |
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|
| T |
490601 |
ca |
490602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 283 - 671
Target Start/End: Complemental strand, 9072257 - 9071869
Alignment:
| Q |
283 |
tatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactaga |
382 |
Q |
| |
|
|||||||||| || |||||||| ||||| |||||||| |||| ||| ||||||||||| |||||||| | |||||||||||| | ||||| |||||| |
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|
| T |
9072257 |
tatcttgtgaacaaatacacaaaccttctaatgcacacccatttttcaatattgtcacaccttcttttattccaagcacttgatccgtccatgtactaga |
9072158 |
T |
|
| Q |
383 |
gaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttatggattgctcccacaaatcctaagtttctatttttc |
482 |
Q |
| |
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|||||| ||| |||||||||| | ||||||||||||||||| || | | || ||||| | || |||| ||||| | | |||||||| || |
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| T |
9072157 |
gaaaagtccttgtgaatcatatttctctttaaccttcaaaaatttctcaatatctttgtactttttgaaaactccttcaaatgccacatttctattctta |
9072058 |
T |
|
| Q |
483 |
ccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctttactacggt |
582 |
Q |
| |
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|||||||| |||||||||||||| ||||| | ||||||||||| |||||||||| ||||||||| |||||||||||| || ||||||||| ||||| | |
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| T |
9072057 |
ccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacgat |
9071958 |
T |
|
| Q |
583 |
aatatgtgatgtcgaaattcacagcatcctctgtgtttcccaagtatgcactagaagttgtaacgtagcgcataaggattccattgtat |
671 |
Q |
| |
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|||||||||| || || | | ||||||||| |||||| | ||| |||||||||| |||||| || ||||| || |||||||||||| |
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|
| T |
9071957 |
aatatgtgatatcaaagtctaatgcatcctcttggtttcctaggtaagcactagaagctgtaacataacgcattagaattccattgtat |
9071869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 591
Target Start/End: Complemental strand, 9059350 - 9059233
Alignment:
| Q |
474 |
ctatttttcccccaatgcggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctt |
573 |
Q |
| |
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||||| ||||||||||| || |||||||||||||| || | ||| ||||| || |||||||||| | ||||||| ||||||||||||||| |||||||| |
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| T |
9059350 |
ctattcttcccccaatgaggcaaccctccatatttaaaaatccctatttgctcaatctcttcaaaaacgtcttcataaagcctaggagtcattggatctt |
9059251 |
T |
|
| Q |
574 |
tactacggtaatatgtga |
591 |
Q |
| |
|
| ||||||||||| |||| |
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|
| T |
9059250 |
tgctacggtaatacgtga |
9059233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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