View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17853_low_11 (Length: 382)
Name: NF17853_low_11
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17853_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 29708425 - 29708050
Alignment:
| Q |
1 |
tcgttggtggtattccctttgatttcactgagggtgatgtcatcgctgtttttgctcagtatgttttattttcatgcatttgatcatgagatgatgcact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29708425 |
tcgttggtggtattccctttgatttcactgagggtgatatcatcgctgtttttgctcagtatgtcttattttcatgcatttgatcatgagatgatgcacc |
29708326 |
T |
|
| Q |
101 |
gttgatgtaaattttatttacactttcaatcaatcacaatcgtctgttgtatgacttttaagatggataggttatgattgatgatagtattcttatggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29708325 |
gttgatgtaaattttatttacactttcaatcaatcacaatcgtctgttgtatgacttttaagatagataggttatgattgatgatagtattcttatggtg |
29708226 |
T |
|
| Q |
201 |
tcggtgcatatcaattaaaattttactactaatttgtgtattgaagatgacaagtgttttgtttttggtgatatatccagatatgga----ttgttgacg |
296 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29708225 |
tcggtgcatatcaattaaaattttactattaatttgtgtattgaagatgacaagtgttttgtttttggtgatatatccagatatggagaggttgttgacg |
29708126 |
T |
|
| Q |
297 |
ttaatcttgttagagacgcctccttctcctccttgcttaaccgagttggtattgatgtgtttattatagatgatgt |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29708125 |
ttaatcttgttagagacgcctccttctcctcctcgcttaaccgagttggtattgatgtgtttattatagatgatgt |
29708050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 29706914 - 29706748
Alignment:
| Q |
1 |
tcgttggtggtattccctttgatttcactgagggtgatgtcatcgctgtttttgctcagtatgttttattttcatgcatttgatcatgaga-------tg |
93 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| |||||||| | |||||| || |
|
|
| T |
29706914 |
tcgtcggtggtattccctttgatttcactgagggtgatgttatcgctgtttttgctcagtatgtattctttccatgcatt---taatgagattaactttg |
29706818 |
T |
|
| Q |
94 |
atgcactgttgatg-taaattttatttacactttcaatcaatcacaatcgtctgttgtatgacttttaag |
162 |
Q |
| |
|
||||||||| |||| |||| || |||||||| ||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
29706817 |
atgcactgtcgatgttaaacttcttttacactgtcaatcaatcacaatcgtctggtatatgacttttaag |
29706748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University