View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17853_low_12 (Length: 351)
Name: NF17853_low_12
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17853_low_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 34018497 - 34018831
Alignment:
| Q |
18 |
ataaagcttcgtgtttgttttccaacatgatcagaattcagtggcattcgcttctattagttaatcatgaaatgaatgttttaaa-gacaagtgaataac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
34018497 |
ataaagcttcgtgtttgttttccaacatgatcagaattcagtggcattcgcttctattagttaatcatgaaatgaatgtttcaaaagacaagtgaataac |
34018596 |
T |
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| Q |
117 |
gtttgaactcaccatcttcttctggttcttaatgcactagcagaacaggggaaaaaagaagcagacggtagggaaaaagcatcatcattagattggatca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34018597 |
gtttgaactcaccatcttcttctggttcttaatgcactagcagaacaggggaaaaaagaagcagacggtagggaaaaaccatcatcattagattggatca |
34018696 |
T |
|
| Q |
217 |
gttcaagcacagtaggcaaccatgattggtatgcctcacgaagcaatcaatctgtttcatcaacaacctgacattatttccctcattatcatatcatata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34018697 |
gttcaagcacagtaggcaaccatgattggtatgcctcacgaagcaatcgatctgtttcatcaaccacctgacattatttccctcattatcatatcatata |
34018796 |
T |
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| Q |
317 |
caataatatatgagaaatgatatttgaacaaccat |
351 |
Q |
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| T |
34018797 |
caataatatatgagaaatgatatttgaacaaccat |
34018831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 33155857 - 33156166
Alignment:
| Q |
18 |
ataaagcttcgtgtttgttttccaacatgatcagaattcagtggcattcgcttctattagttaatcatgaaatgaatgttttaaa-gacaagtgaataac |
116 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| | |
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| T |
33155857 |
ataaagcttc-tgtttgttttccaacatgatcagaattcagtggcattcgcttctattagttaatcatgaaatgaatgtttcaaaagacaagtgaatagc |
33155955 |
T |
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| Q |
117 |
gtttgaactcaccatcttcttctggttcttaatgcactagcagaacaggggaaaaaagaagcagacggtagggaaaaagcatcatcattagattggatca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33155956 |
gtttgaactcaccatcttcttctggttcttaatgcactagcagaacaggggaaaaaagaagcagacggtagggaaaaaccatcatcattagattggatca |
33156055 |
T |
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| Q |
217 |
gttcaagcacagtaggcaaccatgattggtatgcctcacgaagcaatcaatctgtttcatcaacaacctgacattatttccctcattatcatatcatata |
316 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33156056 |
gttcaagcacagtaggcagccatgattggtatgcctcacgaagcaatcgatctgtttcatcaaccacctgacattatttccctcattatcatatcatata |
33156155 |
T |
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| Q |
317 |
caataatatat |
327 |
Q |
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||||||||||| |
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| T |
33156156 |
caataatatat |
33156166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 350
Target Start/End: Original strand, 33712314 - 33712342
Alignment:
| Q |
322 |
atatatgagaaatgatatttgaacaacca |
350 |
Q |
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| T |
33712314 |
atatatgagaaatgatatttgaacaacca |
33712342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 350
Target Start/End: Original strand, 32012890 - 32012918
Alignment:
| Q |
322 |
atatatgagaaatgatatttgaacaacca |
350 |
Q |
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| T |
32012890 |
atatatgagaaatgatatttgaacaacca |
32012918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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