View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17853_low_16 (Length: 277)
Name: NF17853_low_16
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17853_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 135 - 258
Target Start/End: Original strand, 48311036 - 48311159
Alignment:
| Q |
135 |
gggtacctgagaggataaatcagcagcagtataaatgagtgcagaggtaacacttttagtgagaatagggcgtgattttatcatccccaaataccaacca |
234 |
Q |
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| T |
48311036 |
gggtacctgagaggataaatcagcagcagtataaatgagtgcagaggtaacacttttagtgagaatagggcgtgattttatcatccccaaataccaacca |
48311135 |
T |
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| Q |
235 |
acaaaaccaaccttaggaatagat |
258 |
Q |
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| T |
48311136 |
acaaaaccaaccttaggaatagat |
48311159 |
T |
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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 48310912 - 48310998
Alignment:
| Q |
10 |
agaagcataggacaaccaagtgaacaattataacaaacatcaactaaaaaatgttccttttgaacccaaaccaatgaatgcagacaag |
97 |
Q |
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| T |
48310912 |
agaaacataagacaaccaagtgaacaattgtaacaaacatcaactaaaaaa-gttccttttgaacccaaatcaatgaatgcagacaag |
48310998 |
T |
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