View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17853_low_19 (Length: 250)

Name: NF17853_low_19
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17853_low_19
NF17853_low_19
[»] chr4 (6 HSPs)
chr4 (81-131)||(19037738-19037788)
chr4 (77-131)||(5466080-5466134)
chr4 (77-115)||(19037951-19037989)
chr4 (85-119)||(46993308-46993342)
chr4 (80-128)||(8537804-8537852)
chr4 (77-117)||(17914979-17915019)
[»] chr3 (6 HSPs)
chr3 (77-131)||(8657415-8657469)
chr3 (77-131)||(46883643-46883697)
chr3 (77-133)||(8799547-8799603)
chr3 (77-119)||(43797380-43797422)
chr3 (77-119)||(8799345-8799387)
chr3 (80-117)||(33792730-33792767)
[»] chr6 (2 HSPs)
chr6 (77-122)||(22748613-22748658)
chr6 (79-129)||(24194971-24195021)
[»] chr5 (3 HSPs)
chr5 (77-119)||(31193993-31194035)
chr5 (77-119)||(31194196-31194238)
chr5 (77-118)||(17370096-17370137)
[»] chr1 (4 HSPs)
chr1 (77-119)||(34622556-34622598)
chr1 (77-131)||(34970216-34970270)
chr1 (78-118)||(34970014-34970054)
chr1 (78-114)||(49776852-49776888)
[»] chr8 (3 HSPs)
chr8 (79-132)||(22781285-22781338)
chr8 (77-123)||(43598069-43598115)
chr8 (77-118)||(6911260-6911301)
[»] chr2 (6 HSPs)
chr2 (77-118)||(22563441-22563482)
chr2 (77-119)||(4371482-4371524)
chr2 (77-119)||(17200106-17200148)
chr2 (77-119)||(17200309-17200351)
chr2 (77-119)||(20296647-20296689)
chr2 (77-119)||(22563238-22563280)
[»] chr7 (6 HSPs)
chr7 (77-133)||(48006355-48006410)
chr7 (77-119)||(35207206-35207248)
chr7 (77-118)||(35207406-35207447)
chr7 (79-119)||(19318452-19318492)
chr7 (79-119)||(25048257-25048297)
chr7 (79-119)||(39983870-39983910)


Alignment Details
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 19037788 - 19037738
Alignment:
Q  81 catgtcttgcattcaaatcttaaatggagtaaatggagcatacccgaactc 131  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19037788 catgtcttgcatccaaatcttaaatggagtaaatggagcatacccgaactc 19037738  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 5466080 - 5466134
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagcatacccgaactc 131  Q
    |||||||||||| ||| |||| | ||||| |||||||| ||||||||||||||||    
T  5466080 gccacatgtcttacatccaaaccctaaatagagtaaatagagcatacccgaactc 5466134  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 19037951 - 19037989
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatg 115  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  19037951 gccacatgtcttgcatccaaatcctaaatggagtaaatg 19037989  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 46993308 - 46993342
Alignment:
Q  85 tcttgcattcaaatcttaaatggagtaaatggagc 119  Q
    |||||||||||||||||||||||||||||| ||||    
T  46993308 tcttgcattcaaatcttaaatggagtaaattgagc 46993342  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 8537852 - 8537804
Alignment:
Q  80 acatgtcttgcattcaaatcttaaatggagtaaatggagcatacccgaa 128  Q
    ||||||||||||| |||  ||||||| || |||||||||||||||||||    
T  8537852 acatgtcttgcatccaatccttaaattgactaaatggagcatacccgaa 8537804  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 17914979 - 17915019
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatgga 117  Q
    |||||||||||||||| ||||  ||||||||||||||||||    
T  17914979 gccacatgtcttgcatccaaactttaaatggagtaaatgga 17915019  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 8657469 - 8657415
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagcatacccgaactc 131  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  8657469 gccacatgtcttgcattcaaaccctaaatggagtaaatggagcatacccgaactc 8657415  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 46883643 - 46883697
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagcatacccgaactc 131  Q
    |||||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  46883643 gccacatgtcttgcatccaaaccctaaatggagtaaatggagcatacccgaactc 46883697  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 8799547 - 8799603
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagcatacccgaactcat 133  Q
    ||||||||||||||||  ||| | |||||||||||||||||||||||||||||||||    
T  8799547 gccacatgtcttgcatctaaaccctaaatggagtaaatggagcatacccgaactcat 8799603  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 43797422 - 43797380
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagc 119  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  43797422 gccacatgtcttgcatccaaaccttaaatggagtaaatggagc 43797380  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 8799387 - 8799345
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagc 119  Q
    |||||||||||||||| |||| | |||||||||||||||||||    
T  8799387 gccacatgtcttgcatccaaaccctaaatggagtaaatggagc 8799345  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 33792767 - 33792730
Alignment:
Q  80 acatgtcttgcattcaaatcttaaatggagtaaatgga 117  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  33792767 acatgtcttgcatccaaatcttaaatggactaaatgga 33792730  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 22748658 - 22748613
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagcata 122  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  22748658 gccacatgtcttgcatccaaatcttaaatggagtaaatggagcata 22748613  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 24195021 - 24194971
Alignment:
Q  79 cacatgtcttgcattcaaatcttaaatggagtaaatggagcatacccgaac 129  Q
    |||||||||||||| |||| | |||||||| ||||||||||||||||||||    
T  24195021 cacatgtcttgcatccaaagcctaaatggactaaatggagcatacccgaac 24194971  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 31194035 - 31193993
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagc 119  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  31194035 gccacatgtcttgcatccaaaccttaaatggagtaaatggagc 31193993  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 31194196 - 31194238
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagc 119  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  31194196 gccacatgtcttgcatccaaaccttaaatggagtaaatggagc 31194238  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 17370137 - 17370096
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggag 118  Q
    |||||||||||||||| |||| | ||||||||||||||||||    
T  17370137 gccacatgtcttgcatccaaaccctaaatggagtaaatggag 17370096  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 34622556 - 34622598
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagc 119  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  34622556 gccacatgtcttgcattcaaaccttaaatggagtaactggagc 34622598  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 34970216 - 34970270
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagcatacccgaactc 131  Q
    |||||||||||| ||| |||| |||||||  |||||||||| |||||||||||||    
T  34970216 gccacatgtcttacatccaaaccttaaataaagtaaatggaacatacccgaactc 34970270  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 34970054 - 34970014
Alignment:
Q  78 ccacatgtcttgcattcaaatcttaaatggagtaaatggag 118  Q
    ||||||||||||||| |||||| ||||| ||||||||||||    
T  34970054 ccacatgtcttgcatccaaatcctaaattgagtaaatggag 34970014  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 49776888 - 49776852
Alignment:
Q  78 ccacatgtcttgcattcaaatcttaaatggagtaaat 114  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  49776888 ccacatgtcttgcatccaaatcctaaatggagtaaat 49776852  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 22781285 - 22781338
Alignment:
Q  79 cacatgtcttgcattcaaatcttaaatggagtaaatggagcatacccgaactca 132  Q
    ||||| |||||||| |||| | ||||| ||||||||||||||||||||||||||    
T  22781285 cacatatcttgcatccaaaccctaaattgagtaaatggagcatacccgaactca 22781338  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 43598115 - 43598069
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagcatac 123  Q
    ||||||||||||||||  |||||||||||||| ||||| ||||||||    
T  43598115 gccacatgtcttgcatctaaatcttaaatggactaaattgagcatac 43598069  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 6911260 - 6911301
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggag 118  Q
    |||||||||||||||| |||| | ||||||||||||||||||    
T  6911260 gccacatgtcttgcatccaaaccctaaatggagtaaatggag 6911301  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 22563441 - 22563482
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggag 118  Q
    |||||||||||||||| |||||| ||||||||||||||||||    
T  22563441 gccacatgtcttgcatccaaatcctaaatggagtaaatggag 22563482  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 4371524 - 4371482
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagc 119  Q
    |||||||||||||||| |||| | |||||||||||||||||||    
T  4371524 gccacatgtcttgcatccaaaccctaaatggagtaaatggagc 4371482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 17200148 - 17200106
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagc 119  Q
    |||||||||||| ||| |||||| |||||||||||||||||||    
T  17200148 gccacatgtcttacatccaaatcctaaatggagtaaatggagc 17200106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 17200309 - 17200351
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagc 119  Q
    |||||||||||| ||| |||| |||||||||||||||||||||    
T  17200309 gccacatgtcttacatccaaaccttaaatggagtaaatggagc 17200351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 20296647 - 20296689
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagc 119  Q
    |||||||||||| ||| ||| ||||||||||||||||||||||    
T  20296647 gccacatgtcttacatccaattcttaaatggagtaaatggagc 20296689  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 22563280 - 22563238
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagc 119  Q
    |||||||||||||||| |||| | |||||||||||||||||||    
T  22563280 gccacatgtcttgcatccaaaccctaaatggagtaaatggagc 22563238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 48006355 - 48006410
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagcatacccgaactcat 133  Q
    ||||||||| |||||| |||||| ||||| |||||||||||||||| ||||||||||    
T  48006355 gccacatgttttgcatccaaatcctaaatagagtaaatggagcata-ccgaactcat 48006410  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 35207248 - 35207206
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggagc 119  Q
    |||||||||||||||| |||| | |||||||||||||||||||    
T  35207248 gccacatgtcttgcatccaaaccctaaatggagtaaatggagc 35207206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 35207406 - 35207447
Alignment:
Q  77 gccacatgtcttgcattcaaatcttaaatggagtaaatggag 118  Q
    |||||||||||||||| |||| | ||||||||||||||||||    
T  35207406 gccacatgtcttgcatccaaaccctaaatggagtaaatggag 35207447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 19318452 - 19318492
Alignment:
Q  79 cacatgtcttgcattcaaatcttaaatggagtaaatggagc 119  Q
    ||||||||||||||  ||| |||||||||||||||||||||    
T  19318452 cacatgtcttgcatctaaaccttaaatggagtaaatggagc 19318492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 25048257 - 25048297
Alignment:
Q  79 cacatgtcttgcattcaaatcttaaatggagtaaatggagc 119  Q
    |||||||||||||| |||||| |||||| ||||||||||||    
T  25048257 cacatgtcttgcatccaaatcctaaatgaagtaaatggagc 25048297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 39983870 - 39983910
Alignment:
Q  79 cacatgtcttgcattcaaatcttaaatggagtaaatggagc 119  Q
    |||||||||||||| |||| | |||||||||||||||||||    
T  39983870 cacatgtcttgcatccaaaccctaaatggagtaaatggagc 39983910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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