View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17853_low_21 (Length: 243)
Name: NF17853_low_21
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17853_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 8160171 - 8160037
Alignment:
| Q |
4 |
aattaccgttgtaagcttcctattttttgtaggggccaaaattaatggtcaatttattggagaaaggttaaattattagtagtacgaattgtacacactg |
103 |
Q |
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| T |
8160171 |
aattactgttgtaagctacctattttttgtaggggccaaaattaatggtcaatttattggagaaaggttaaattattagtagtacgaattgtacacactg |
8160072 |
T |
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| Q |
104 |
aacctccttttaacattcatttgaccaacattctt |
138 |
Q |
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| T |
8160071 |
aacctccttttaacattcgtttgatgaacattctt |
8160037 |
T |
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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 8159637 - 8159553
Alignment:
| Q |
143 |
aaaaacaaaaccttcatttgaccaacatctcaatttatattactaggctacannnnnnngattatgtggtaagccacgtagttaa |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |
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| T |
8159637 |
aaaaacaaaaccttcatttgaccaacatctcaatttatattactgggctacatttttttgataatgtggtaagccacgtagttaa |
8159553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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