View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17853_low_22 (Length: 241)
Name: NF17853_low_22
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17853_low_22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 45863925 - 45864154
Alignment:
| Q |
18 |
taaaatactgcaaaaacaactactataaagatgagt--------gcgatttactcatgggaatatactattaacaggcatttttgagactgtaacgcact |
109 |
Q |
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| T |
45863925 |
taaaatactgcaaaaacaactactataaagatgagtttcactgtgcgatttactcatgggaatatactattaacaggcatttttgagact--aacgcact |
45864022 |
T |
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| Q |
110 |
tcacgcggggatacaatttaaaagtaacttaaaaatgtttcttatcactataaaatataagctaaataaccgaatcacttcaaagatagacagctaatga |
209 |
Q |
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| T |
45864023 |
tcacgcggggatacaatttaaaagtaacttaaaaatgtttcttatcactataaaatataagctaaataaccgaatcacttcaaagatagacatctaatga |
45864122 |
T |
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| Q |
210 |
aattgtaagtaattgaagaggaatcaaactca |
241 |
Q |
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| T |
45864123 |
aattgtaagtaattgaagaggaatcaaactca |
45864154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 17406440 - 17406318
Alignment:
| Q |
120 |
atacaatttaaaagtaacttaaaaatgtttcttatc-actataaaatataagctaaataaccgaatcacttc---aaagatagacagctaatgaaattgt |
215 |
Q |
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| T |
17406440 |
atacgatttaaaagtaagttaaaaatgtgtcttatcaactataagatataagctaaataactgaattgcttcattaaagacagacaacttatgaaattgt |
17406341 |
T |
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| Q |
216 |
aagtaattgaagaggaatcaaac |
238 |
Q |
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| T |
17406340 |
cagtaattgaagagaaaacaaac |
17406318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 3576138 - 3576175
Alignment:
| Q |
109 |
ttcacgcggggatacaatttaaaagtaacttaaaaatg |
146 |
Q |
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| T |
3576138 |
ttcacacggggatacaatttaaaagtaagttaaaaatg |
3576175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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