View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17853_low_23 (Length: 237)
Name: NF17853_low_23
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17853_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34130202 - 34130422
Alignment:
| Q |
1 |
ataaaaatttccataacaagaaccaaaaaagtttaaattaattaaccttatcaccacgttcgatatatttaacagcaacaagctctttggtttgtttatc |
100 |
Q |
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| T |
34130202 |
ataaaaatttccataacaagaaccaaaaaagtttaaattaattaaccttatcaccacgttcgatatatttaacagcaacaagctctttggtttgtttatc |
34130301 |
T |
|
| Q |
101 |
ttgcatcaacctagcaataccgaaatttccggacccgatatcacgaaccagatcgtaccgatcactgtcgtgcatgatcggtaaatccatacccggtccg |
200 |
Q |
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| T |
34130302 |
ttgcatcaacctagcaataccgaaatttccggacccgatatcacgaaccagatcgtaccgatcactgtcgtgcatgatcggtaaatccatacccggtccg |
34130401 |
T |
|
| Q |
201 |
accgtcatagcagctcgatcc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
34130402 |
accgtcatagcagctcgatcc |
34130422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 190
Target Start/End: Complemental strand, 6708507 - 6708361
Alignment:
| Q |
44 |
aaccttatcaccacgttcgatatatttaacagcaacaagctctttggtttgtttatcttgcatcaacctagcaataccgaaatttccggacccgatatca |
143 |
Q |
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||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||| ||| | ||||||| |||||||| || || || ||||| |
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| T |
6708507 |
aaccttatctccgcgttcgatatatttgacagcaacaagctctttggtgtgtttatctctcatgagtctagcaacgccgaaattccctgatccaatatct |
6708408 |
T |
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| Q |
144 |
cgaaccagatcgtaccgatcactgtcgtgcatgatcggtaaatccat |
190 |
Q |
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| T |
6708407 |
cgaacgaaatcgtaacggtcgctgtcgtgcatgatcggcatatccat |
6708361 |
T |
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