View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17853_low_25 (Length: 202)
Name: NF17853_low_25
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17853_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 44692456 - 44692289
Alignment:
| Q |
19 |
gatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagcctgttgagacgattcaaagttatataaatcctccgttca |
118 |
Q |
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| T |
44692456 |
gatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcggacatagcctgttgcgacgattcaaagttatataaatcctcagttca |
44692357 |
T |
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| Q |
119 |
ccttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcaagttcttcttccacag |
186 |
Q |
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| T |
44692356 |
ccttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcacgttcttcttccacag |
44692289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 44653756 - 44653599
Alignment:
| Q |
20 |
atctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagcctgttgagacgattcaaagttatataaatcctccgttcac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| |||||||| | |||||| |
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| T |
44653756 |
atctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagcctgttgagatgattcaaagttacataaatccacagttcac |
44653657 |
T |
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| Q |
120 |
cttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcaagttcttcttccacag |
186 |
Q |
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| T |
44653656 |
catatc-------aataaataatattcgt--aacaaaaaagaaccttctcaagttcttcttccacag |
44653599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 44632283 - 44632121
Alignment:
| Q |
20 |
atctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagcctgttgagacgattcaaagttatataaatcctccgttcac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||| |||| |||||| |
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| T |
44632283 |
atctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagcctgttgaggttattcaaagttacataaaccctcagttcac |
44632184 |
T |
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| Q |
120 |
cttatcaggaaatagtaaatactaattgtaa-aacaaaa--aagaaccttctcaagttcttcttccacag |
186 |
Q |
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|||||| | |||||||||||||||| ||||||| || |||||||||||||||||||||||||| |
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| T |
44632183 |
cttatc-------aataaatactaattgtaataacaaaaataaaaaccttctcaagttcttcttccacag |
44632121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 44682764 - 44682608
Alignment:
| Q |
20 |
atctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagcctgttgagacgattcaaagttatataaatcctccgttcac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| |||||||| | |||||| |
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| T |
44682764 |
atctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagcctgttgagatgattcaaagttacataaatccacagttcac |
44682665 |
T |
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| Q |
120 |
cttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcaagttcttcttccacag |
186 |
Q |
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| T |
44682664 |
catatcaataaataat--------atcgt--aacaaaaaagaaccttctcaagttcttcttccacag |
44682608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 44636605 - 44636768
Alignment:
| Q |
21 |
tctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagcctgttgagacgattcaaagttatataaatcctccgttcacc |
120 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||| | ||||||||||| ||||||| |||||||| |||||||||| ||||||| |
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| T |
44636605 |
tctggctctatatcaacaatcagtgtttgaacaatttcatagccataagctgacatagcctgttaagacgatccaaagttacataaatcctcagttcacc |
44636704 |
T |
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| Q |
121 |
ttatcaggaaatagtaaatactaattgtaaaacaa-aaaagaaccttctcaagttcttcttccacag |
186 |
Q |
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|||||| |||| | |||| |||| ||||||| |||| |||||||||||||||||||||||||| |
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| T |
44636705 |
ttatcaacaaat-gaaaattgtaat--aaaaacaacaaaaaaaccttctcaagttcttcttccacag |
44636768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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