View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17853_low_3 (Length: 553)

Name: NF17853_low_3
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17853_low_3
NF17853_low_3
[»] chr5 (1 HSPs)
chr5 (9-167)||(31094648-31094806)
[»] chr1 (5 HSPs)
chr1 (80-343)||(11917985-11918246)
chr1 (9-114)||(20601216-20601322)
chr1 (160-262)||(40836584-40836686)
chr1 (40-268)||(42833449-42833688)
chr1 (160-264)||(20601368-20601472)
[»] chr6 (5 HSPs)
chr6 (10-114)||(29955327-29955432)
chr6 (10-341)||(22624973-22625306)
chr6 (10-114)||(12491961-12492066)
chr6 (160-265)||(29955479-29955584)
chr6 (215-341)||(12491733-12491859)
[»] chr2 (5 HSPs)
chr2 (10-114)||(19714263-19714368)
chr2 (10-54)||(19704669-19704713)
chr2 (160-265)||(19714415-19714520)
chr2 (52-114)||(19709474-19709537)
chr2 (215-265)||(19709639-19709689)
[»] scaffold0631 (1 HSPs)
scaffold0631 (10-113)||(4466-4570)
[»] chr7 (2 HSPs)
chr7 (9-114)||(9272627-9272733)
chr7 (10-100)||(65251-65342)
[»] chr3 (4 HSPs)
chr3 (9-114)||(1208515-1208621)
chr3 (80-186)||(3415852-3415959)
chr3 (10-114)||(10050880-10050985)
chr3 (160-265)||(1208363-1208468)
[»] chr4 (2 HSPs)
chr4 (10-114)||(15210926-15211031)
chr4 (160-265)||(16668794-16668898)
[»] scaffold0057 (2 HSPs)
scaffold0057 (9-114)||(76263-76369)
scaffold0057 (160-265)||(76416-76521)
[»] scaffold0807 (2 HSPs)
scaffold0807 (10-114)||(30-135)
scaffold0807 (160-265)||(182-287)
[»] scaffold1028 (2 HSPs)
scaffold1028 (10-114)||(1021-1126)
scaffold1028 (160-265)||(869-974)
[»] scaffold0582 (2 HSPs)
scaffold0582 (40-121)||(9642-9724)
scaffold0582 (160-269)||(9764-9873)
[»] scaffold0224 (1 HSPs)
scaffold0224 (40-268)||(20529-20768)
[»] chr8 (3 HSPs)
chr8 (161-265)||(31266475-31266579)
chr8 (40-87)||(24499805-24499852)
chr8 (160-275)||(24499918-24500033)
[»] scaffold0120 (1 HSPs)
scaffold0120 (371-477)||(2821-2927)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 31094806 - 31094648
Alignment:
Q  9 aatattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagagaatcaaacataatgccatgctatgccgccaaaga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  31094806 aatattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagataatcaaacataatgccatgctatgccaccaaaga 31094707  T
Q  109 tgagactctttcacactacgcatgatatgccacaagaaaatattttatcactttattta 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31094706 tgagactctttcacactacgcatgatatgccacaagaaaatattttatcactttattta 31094648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 80 - 343
Target Start/End: Original strand, 11917985 - 11918246
Alignment:
Q  80 aacataatgccatgctatgccgccaaagatgagactctttcacactacgcatgatatgccacaagaaaatattttat--cactttatttatattaaagtt 177  Q
    ||||||||| ||||||||||  | ||| ||||||||||||||||||   |||||||||||| || | | |||||| |  ||||||||||| |||||||||    
T  11917985 aacataatgtcatgctatgcaacaaaaaatgagactctttcacactgtacatgatatgccaaaa-atattattttctaccactttatttacattaaagtt 11918083  T
Q  178 tcctccttttattaggaaaagggctctattatcaacctagcctatgagtttatgactacatgattgtacggaataccgcccttacc-ttgggtaattttc 276  Q
    || |||||||||||||||||| |||||| || |||| |||| |||||||||||||||||||||||||||| |||||| |||||||| ||| ||  |||||    
T  11918084 tcttccttttattaggaaaagagctctactaccaacttagcatatgagtttatgactacatgattgtacgaaataccacccttacctttgcgtgtttttc 11918183  T
Q  277 cttcaacaaatgacgtccttaagattgatttacgcactgaaagcacgagctagtcttggtattctac 343  Q
    |||| ||    |||||||||||| ||||||| ||||| ||| ||||| ||||||||||| |||||||    
T  11918184 cttcgac---ggacgtccttaaggttgattt-cgcaccgaatgcacgggctagtcttgggattctac 11918246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 20601216 - 20601322
Alignment:
Q  9 aatattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagagaatcaaa-cataatgccatgctatgccgccaaag 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||| | ||||    
T  20601216 aatattcaaactttcttccaaaatattcatcacattcatcaaagcattttctttaaagcacaagagagtcaaatcataatgccatgctatgccacaaaag 20601315  T
Q  108 atgagac 114  Q
    |||||||    
T  20601316 atgagac 20601322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 160 - 262
Target Start/End: Original strand, 40836584 - 40836686
Alignment:
Q  160 tttatttatattaaagtttcctccttttattaggaaaagggctctattatcaacctagcctatgagtttatgactacatgattgtacggaataccgccct 259  Q
    |||||||||||||||||||||  |||||||||||||||  |||||  || |||| ||| ||||| |||||||||||||||||||||||||||| || |||    
T  40836584 tttatttatattaaagtttccatcttttattaggaaaatagctctgctaccaacttagtctatgggtttatgactacatgattgtacggaatatcggcct 40836683  T
Q  260 tac 262  Q
    |||    
T  40836684 tac 40836686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 40 - 268
Target Start/End: Complemental strand, 42833688 - 42833449
Alignment:
Q  40 acattcatcaaagcattttctctaaagaacaagagaatcaaacata-----------atgccatgctatgccgccaaagatgagactctttcacactacg 128  Q
    |||||||||||||||||||||||||||||||||| |||||||||||           ||||||||||||||| |||||||||||||| |||| ||| ||     
T  42833688 acattcatcaaagcattttctctaaagaacaagataatcaaacataattacaacgtcatgccatgctatgccaccaaagatgagact-tttc-caccaca 42833591  T
Q  129 catgatatgccacaaga--aaatattttatcactttatttatattaaagtttcctccttttattaggaaaagggctctattatcaacctagcctatgagt 226  Q
     |||| |||| | || |  | |||||| ||   |||||||||||| |||||| ||||| ||| || || ||||||||||   ||||| || | ||||||     
T  42833590 tatgaaatgcaataaaaatatatatttcattcttttatttatattcaagttttctcctcttactatgataagggctctacgttcaacttaacttatgaga 42833491  T
Q  227 ttatgactacatgattgtacggaataccgcccttaccttggg 268  Q
    |||||| || || ||||||||||||| |||||||||||||||    
T  42833490 ttatgaatatataattgtacggaatatcgcccttaccttggg 42833449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 264
Target Start/End: Original strand, 20601368 - 20601472
Alignment:
Q  160 tttatttatattaaagtttcctccttttattaggaaaagggctctattatcaacctagcctatgagtttatgactacatgattgtacggaataccgccct 259  Q
    |||||||||||| |||||| ||||| ||||||||| ||||||||||   ||||  |||| |||||| |||||| || || ||| ||| |||||| |||||    
T  20601368 tttatttatattcaagttttctcctcttattaggataagggctctacgttcaaattagcttatgagattatgaatatataattatacagaatactgccct 20601467  T
Q  260 tacct 264  Q
    |||||    
T  20601468 tacct 20601472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 29955327 - 29955432
Alignment:
Q  10 atattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagagaatcaaa-cataatgccatgctatgccgccaaaga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| | |||||    
T  29955327 atattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagcacaagagagtcaaatcataatgccatgctatgccacaaaaga 29955426  T
Q  109 tgagac 114  Q
    ||||||    
T  29955427 tgagac 29955432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 10 - 341
Target Start/End: Complemental strand, 22625306 - 22624973
Alignment:
Q  10 atattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagagaatcaaa-cataatgccatgctatgccgccaaaga 108  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| | |||||    
T  22625306 atatttaaactttctttcaaaatattcatcatattcatcaaagcattttctctaaagcacaagagagtcaaatcataatgccatgctatgccacaaaaga 22625207  T
Q  109 tgagactctttcacactacgcatgatatgccacaaga---aaatattttatcactttatttatattaaagtttcctccttttattaggaaaagggctcta 205  Q
    ||||||  |||  ||  |  ||||| |||| | || |   |  ||||| ||   |||||||||||| |||| | ||| | ||||||||| ||| ||||||    
T  22625206 tgagacctttt--catcaaacatgaaatgcaataaaagttatctatttcattcttttatttatattcaagtcttctcatcttattaggataagtgctcta 22625109  T
Q  206 ttatcaacctagcctatgagtttatgactacatgattgtacggaataccgcccttacc-ttgggtaattttccttcaacaaatgacgtccttaagattga 304  Q
       ||||  |||| |||||| |||||| || || |||||||||||||||||||||||| ||| || | ||||| || ||| | ||||||| || ||||||    
T  22625108 cgttcaaattagcttatgagattatgaatatataattgtacggaataccgcccttacctttgagtgactttccgtcgacacaagacgtccctaggattga 22625009  T
Q  305 tttacgcactgaaagcacgagctagtcttggtattct 341  Q
     || |||||  || ||||||||||||||||| |||||    
T  22625008 -ttccgcaccaaatgcacgagctagtcttgggattct 22624973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 12492066 - 12491961
Alignment:
Q  10 atattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagagaatcaaa-cataatgccatgctatgccgccaaaga 108  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||| | ||| |    
T  12492066 atattcaaactttctttcaaaatattcatcacattcatcaaaacattttctctaaagcacaagagagtcaaatcataatgccatgctatgccacaaaaca 12491967  T
Q  109 tgagac 114  Q
    ||||||    
T  12491966 tgagac 12491961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 265
Target Start/End: Original strand, 29955479 - 29955584
Alignment:
Q  160 tttatttatattaaagtttcctccttttattaggaaaagggctctattatcaacctagcctatgagtttatgactacatgattgtacggaataccgccct 259  Q
    |||||||||||| |||| | ||| | ||||||||| ||||||||||   ||||  |||| |||||| |||||| || || ||||||||||||||||||||    
T  29955479 tttatttatattcaagtcttctcatcttattaggataagggctctacgttcaaattagcttatgagattatgaatatataattgtacggaataccgccct 29955578  T
Q  260 tacctt 265  Q
    ||||||    
T  29955579 tacctt 29955584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 341
Target Start/End: Complemental strand, 12491859 - 12491733
Alignment:
Q  215 tagcctatgagtttatgactacatgattgtacggaataccgcccttacc-ttgggtaattttccttcaacaaatgacgtccttaagattgatttacgcac 313  Q
    |||| |||||| |||| | || || |||||||||||||||||||||||| ||| || | ||||| || ||| | || |||| |||||||| ||| |||||    
T  12491859 tagcttatgagattataaatatataattgtacggaataccgcccttacctttgagtgactttccgtcgacacaagatgtccctaagattg-tttccgcac 12491761  T
Q  314 tgaaagcacgagctagtcttggtattct 341  Q
      || ||||||||||||||||| |||||    
T  12491760 caaatgcacgagctagtcttgggattct 12491733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 19714263 - 19714368
Alignment:
Q  10 atattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagagaatcaaa-cataatgccatgctatgccgccaaaga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| | |||||    
T  19714263 atattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagcacaagagagtcaaatcataatgccatgctatgccacaaaaga 19714362  T
Q  109 tgagac 114  Q
    ||||||    
T  19714363 tgagac 19714368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 19704669 - 19704713
Alignment:
Q  10 atattcaaactttctttcaaaatattcatcacattcatcaaagca 54  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19704669 atattcaaactttctttcaaaatattcatcacattcatcaaagca 19704713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 265
Target Start/End: Original strand, 19714415 - 19714520
Alignment:
Q  160 tttatttatattaaagtttcctccttttattaggaaaagggctctattatcaacctagcctatgagtttatgactacatgattgtacggaataccgccct 259  Q
    |||||||||||| |||| | ||| | ||||||||| ||||||||||   ||||  |||| |||||| |||||| || || ||||||||||||||||||||    
T  19714415 tttatttatattcaagtcttctcatcttattaggataagggctctacgttcaaattagcttatgagattatgaatatataattgtacggaataccgccct 19714514  T
Q  260 tacctt 265  Q
    ||||||    
T  19714515 tacctt 19714520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 19709474 - 19709537
Alignment:
Q  52 gcattttctctaaagaacaagagaatcaaa-cataatgccatgctatgccgccaaagatgagac 114  Q
    ||||||||||||||| |||||||| ||||| ||||| | ||||||||||| | |||||||||||    
T  19709474 gcattttctctaaagcacaagagagtcaaatcataaagacatgctatgccacaaaagatgagac 19709537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 19709639 - 19709689
Alignment:
Q  215 tagcctatgagtttatgactacatgattgtacggaataccgcccttacctt 265  Q
    |||| |||||| |||||| || || ||||||||||||||||||||||||||    
T  19709639 tagcttatgagattatgaatatataattgtacggaataccgcccttacctt 19709689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0631 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 10 - 113
Target Start/End: Complemental strand, 4570 - 4466
Alignment:
Q  10 atattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagagaatcaaa-cataatgccatgctatgccgccaaaga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| | |||||    
T  4570 atattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagcacaagagagtcaaatcataatgccatgctatgccacaaaaga 4471  T
Q  109 tgaga 113  Q
    |||||    
T  4470 tgaga 4466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 9272733 - 9272627
Alignment:
Q  9 aatattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagagaatcaaa-cataatgccatgctatgccgccaaag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||| | ||||    
T  9272733 aatattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagcacaagagagtcaaatcataatgtcatgctatgccacaaaag 9272634  T
Q  108 atgagac 114  Q
    |||||||    
T  9272633 atgagac 9272627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 65342 - 65251
Alignment:
Q  10 atattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagagaatcaaa-cataatgccatgctatgcc 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||    
T  65342 atattcaaacttcctttcaaaatattcatcacattcatcaaagcattttctctaaagcacaagagagtcaaatcataatgccatgcaatgcc 65251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 1208621 - 1208515
Alignment:
Q  9 aatattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagagaatcaaa-cataatgccatgctatgccgccaaag 107  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| | ||||    
T  1208621 aatattcaaactttctttcaaaatgttcatcacattcatcaaagcattttctctaaagcacaagagagtcaaatcataatgccatgctatgccacaaaag 1208522  T
Q  108 atgagac 114  Q
    |||||||    
T  1208521 atgagac 1208515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 3415852 - 3415959
Alignment:
Q  80 aacataatgccatgctatgccgccaaagatgagactctttcacactacgcatgatatgccacaag-aaaatattttatcactttatttatattaaagttt 178  Q
    ||||| ||||||||||||||| || ||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  3415852 aacatgatgccatgctatgccacccaagatgagactctttcacactacacatggtatgccacaagaaaaatatattatcactttatttatattaaagttt 3415951  T
Q  179 cctccttt 186  Q
    ||||||||    
T  3415952 cctccttt 3415959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 10050985 - 10050880
Alignment:
Q  10 atattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagagaatcaaa-cataatgccatgctatgccgccaaaga 108  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| ||||| | ||||||||||| | |||||    
T  10050985 atattcaaactctctttcaaaatattcatcacatttatcaaagcattttctctaaagcacaagagagtcaaatcataacgtcatgctatgccacaaaaga 10050886  T
Q  109 tgagac 114  Q
    ||||||    
T  10050885 tgagac 10050880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 265
Target Start/End: Complemental strand, 1208468 - 1208363
Alignment:
Q  160 tttatttatattaaagtttcctccttttattaggaaaagggctctattatcaacctagcctatgagtttatgactacatgattgtacggaataccgccct 259  Q
    |||||||||||| |||| | ||| | ||||||||| ||||||||||   | ||  |||| |||||| |||||| || || ||||||||||||||||||||    
T  1208468 tttatttatattcaagtcttctcatcttattaggataagggctctacgtttaaattagcttatgagattatgaatatataattgtacggaataccgccct 1208369  T
Q  260 tacctt 265  Q
    ||||||    
T  1208368 tacctt 1208363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 15211031 - 15210926
Alignment:
Q  10 atattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagagaatcaaa-cataatgccatgctatgccgccaaaga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||| | |||||    
T  15211031 atattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagcacaagagagtcaaatcataatgtcatgctatgccacaaaaga 15210932  T
Q  109 tgagac 114  Q
    ||||||    
T  15210931 tgagac 15210926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 265
Target Start/End: Complemental strand, 16668898 - 16668794
Alignment:
Q  160 tttatttatattaaagtttcctccttttattaggaaaagggctctattatcaacctagcctatgagtttatgactacatgattgtacggaataccgccct 259  Q
    |||||||||||||||||||||||||||||||| |||||   |||||  | |||| ||||||||| |||||||||||||||||||| || |||||| | ||    
T  16668898 tttatttatattaaagtttcctccttttattatgaaaa-atctctacaaccaacttagcctatgggtttatgactacatgattgtgcgaaataccactct 16668800  T
Q  260 tacctt 265  Q
    ||||||    
T  16668799 tacctt 16668794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 76263 - 76369
Alignment:
Q  9 aatattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagagaatca-aacataatgccatgctatgccgccaaag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||||||| ||||||||| | ||||    
T  76263 aatattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagcacaagagagtcatatcataatgccctgctatgccacaaaag 76362  T
Q  108 atgagac 114  Q
    |||||||    
T  76363 atgagac 76369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 160 - 265
Target Start/End: Original strand, 76416 - 76521
Alignment:
Q  160 tttatttatattaaagtttcctccttttattaggaaaagggctctattatcaacctagcctatgagtttatgactacatgattgtacggaataccgccct 259  Q
    |||||||||||| |||| | ||| | ||||| ||| ||||||||||   ||||  || | |||||| |||||| || || ||||||||||||||||||||    
T  76416 tttatttatattcaagtcttctcatcttatttggataagggctctacgttcaagttatcttatgagattatgaatagataattgtacggaataccgccct 76515  T
Q  260 tacctt 265  Q
    ||||||    
T  76516 tacctt 76521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 30 - 135
Alignment:
Q  10 atattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagagaatcaaa-cataatgccatgctatgccgccaaaga 108  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| ||||| ||||||| ||||||||||| |  ||||    
T  30 atattcaaactttctttcaaaatattcatcacattcatgaaagcattttctctaacgcacaagagagtcaaatcataatgtcatgctatgccacagaaga 129  T
Q  109 tgagac 114  Q
    ||||||    
T  130 tgagac 135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 265
Target Start/End: Original strand, 182 - 287
Alignment:
Q  160 tttatttatattaaagtttcctccttttattaggaaaagggctctattatcaacctagcctatgagtttatgactacatgattgtacggaataccgccct 259  Q
    |||||||||||| |||| | ||| | ||||||||| ||||||| ||   ||||  |||| |||||| |||||| || || ||||||||||||||||||||    
T  182 tttatttatattcaagtcttctcatcttattaggataagggctgtacgttcaaattagcttatgagattatgaatatataattgtacggaataccgccct 281  T
Q  260 tacctt 265  Q
    ||||||    
T  282 tacctt 287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1028 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold1028
Description:

Target: scaffold1028; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 1126 - 1021
Alignment:
Q  10 atattcaaactttctttcaaaatattcatcacattcatcaaagcattttctctaaagaacaagagaatcaaa-cataatgccatgctatgccgccaaaga 108  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| ||||| ||||||| ||||||||||| |  ||||    
T  1126 atatttaaactttctttcaaaatattcatcacattcatgaaagcattttctctaacgcacaagagagtcaaatcataatgtcatgctatgccacagaaga 1027  T
Q  109 tgagac 114  Q
    ||||||    
T  1026 tgagac 1021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1028; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 265
Target Start/End: Complemental strand, 974 - 869
Alignment:
Q  160 tttatttatattaaagtttcctccttttattaggaaaagggctctattatcaacctagcctatgagtttatgactacatgattgtacggaataccgccct 259  Q
    |||||||||||| |||| | ||| | ||||||||| ||||||| ||   ||||  |||| |||||| |||||| || || ||||||||||||||||||||    
T  974 tttatttatattcaagtcttctcatcttattaggataagggctgtacgttcaaattagcttatgagattatgaatatataattgtacggaataccgccct 875  T
Q  260 tacctt 265  Q
    ||||||    
T  874 tacctt 869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 9642 - 9724
Alignment:
Q  40 acattcatcaaagcattttctctaaagaacaagagaatcaaa-cataatgccatgctatgccgccaaagatgagactctttca 121  Q
    ||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| | ||||||||||| ||||||    
T  9642 acattcatcaaagcattttctctaaagcacaagagagtcaaatcataatgccatgctatgccacaaaagatgagaccctttca 9724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 9764 - 9873
Alignment:
Q  160 tttatttatattaaagtttcctccttttattaggaaaagggctctattatcaacctagcctatgagtttatgactacatgattgtacggaataccgccct 259  Q
    |||||||||||| |||| | ||| | ||||||||| |||| |||||   ||||  |||| |||||| |||||| || || | ||||||||||||||||||    
T  9764 tttatttatattcaagtcttctcatcttattaggataaggactctacgttcaaattagcttatgagattatgaatatataactgtacggaataccgccct 9863  T
Q  260 taccttgggt 269  Q
    ||||||||||    
T  9864 taccttgggt 9873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 40 - 268
Target Start/End: Complemental strand, 20768 - 20529
Alignment:
Q  40 acattcatcaaagcattttctctaaagaacaagagaatcaaacata-----------atgccatgctatgccgccaaagatgagactctttcacactacg 128  Q
    |||||||||||||||||||||||||||||||||| |||||||||||           ||||||||||||||| |||||||||||||| |||| ||| ||     
T  20768 acattcatcaaagcattttctctaaagaacaagataatcaaacataattacaacgtcatgccatgctatgccaccaaagatgagact-tttc-caccaca 20671  T
Q  129 catgatatgccacaaga--aaatattttatcactttatttatattaaagtttcctccttttattaggaaaagggctctattatcaacctagcctatgagt 226  Q
     |||| |||| | || |  | |||||| ||   |||||||||||| |||||| ||||| ||| || || ||||||||||   ||||| || | ||||||     
T  20670 tatgaaatgcaataaaaatatatatttcattcttttatttatattcaagttttctcctcttactatgataagggctctacgttcaacttaacttatgaga 20571  T
Q  227 ttatgactacatgattgtacggaataccgcccttaccttggg 268  Q
    |||||| || || ||||||||||||| |||||||||||||||    
T  20570 ttatgaatatataattgtacggaatatcgcccttaccttggg 20529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 31266475 - 31266579
Alignment:
Q  161 ttatttatattaaagtttcctccttttattaggaaaagggctctattatcaacctagcctatgagtttatgactacatgattgtacggaataccgccctt 260  Q
    |||||||||||||||||| |||||||||||| || |||  ||||| || |||| |||| ||||| ||||||| ||||||| ||||||||||||||  |||    
T  31266475 ttatttatattaaagttttctccttttattaagacaagaactctactaccaacttagcttatgattttatgaatacatgactgtacggaataccgttctt 31266574  T
Q  261 acctt 265  Q
    |||||    
T  31266575 acctt 31266579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 24499805 - 24499852
Alignment:
Q  40 acattcatcaaagcattttctctaaagaacaagagaatcaaacataat 87  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||    
T  24499805 acattcatcaaagcattttctctaaagaacaatagaatcaaatataat 24499852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 24499918 - 24500033
Alignment:
Q  160 tttatttatattaaagtttcctccttttattaggaaaagggctctattatcaacctagcctatgagtttatgactacatgattgtacggaataccgccct 259  Q
    |||||||||||| | |||| ||| | |||||| || || |||||||   ||||  |||| |||||  |||||| || || ||||||||||||| ||||||    
T  24499918 tttatttatattcaggttttctcatcttattaagataaaggctctacgttcaagttagcttatgaaattatgaatatataattgtacggaatatcgccct 24500017  T
Q  260 taccttgggtaatttt 275  Q
    |||||||||| |||||    
T  24500018 taccttgggtgatttt 24500033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 371 - 477
Target Start/End: Original strand, 2821 - 2927
Alignment:
Q  371 tgataattgtactttgagccatgacacaatcttaatgaaaacgacttaacaatggattatgaatgaaggaatggaagaggaagggaacaacataacttta 470  Q
    ||||||| |||||||||| ||  | |||||||||||||||| |||||| |  |  |||||||| | |||||||||||||||| || |||||| || ||||    
T  2821 tgataatcgtactttgaggcagaatacaatcttaatgaaaatgacttatccttacattatgaacgcaggaatggaagaggaaagggacaacacaagttta 2920  T
Q  471 ccttaag 477  Q
    |||||||    
T  2921 ccttaag 2927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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