View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17853_low_4 (Length: 525)

Name: NF17853_low_4
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17853_low_4
NF17853_low_4
[»] chr1 (3 HSPs)
chr1 (13-510)||(22646111-22646608)
chr1 (77-402)||(20880066-20880391)
chr1 (14-477)||(7682509-7682972)
[»] scaffold0018 (1 HSPs)
scaffold0018 (13-510)||(3040-3537)
[»] chr2 (4 HSPs)
chr2 (13-510)||(24811096-24811593)
chr2 (13-510)||(19309370-19309867)
chr2 (14-475)||(21168876-21169337)
chr2 (14-477)||(24421920-24422383)
[»] scaffold0010 (1 HSPs)
scaffold0010 (13-503)||(108278-108768)
[»] chr7 (2 HSPs)
chr7 (13-510)||(13181157-13181654)
chr7 (151-477)||(15884999-15885325)
[»] chr6 (8 HSPs)
chr6 (16-510)||(19458368-19458862)
chr6 (14-510)||(1654118-1654614)
chr6 (77-474)||(18546753-18547143)
chr6 (176-474)||(17782916-17783214)
chr6 (140-478)||(25683212-25683550)
chr6 (359-465)||(14066813-14066919)
chr6 (85-139)||(17783230-17783284)
chr6 (427-477)||(17050812-17050862)
[»] chr3 (6 HSPs)
chr3 (199-510)||(13134678-13134989)
chr3 (13-478)||(15836659-15837124)
chr3 (13-204)||(13142822-13143013)
chr3 (14-478)||(15657553-15658017)
chr3 (151-477)||(11213184-11213510)
chr3 (14-478)||(14318007-14318471)
[»] scaffold0207 (1 HSPs)
scaffold0207 (13-502)||(23823-24312)
[»] chr5 (5 HSPs)
chr5 (14-477)||(23481513-23481977)
chr5 (13-402)||(13526698-13527087)
chr5 (14-478)||(21672940-21673404)
chr5 (14-402)||(19470973-19471361)
chr5 (433-477)||(19474944-19474988)
[»] scaffold0185 (2 HSPs)
scaffold0185 (13-420)||(12600-13007)
scaffold0185 (452-510)||(12521-12579)
[»] scaffold0012 (1 HSPs)
scaffold0012 (13-510)||(1169-1666)
[»] scaffold0017 (1 HSPs)
scaffold0017 (13-510)||(50234-50731)
[»] scaffold0297 (1 HSPs)
scaffold0297 (14-477)||(20058-20520)
[»] scaffold0132 (2 HSPs)
scaffold0132 (13-505)||(21509-22002)
scaffold0132 (13-505)||(34710-35203)
[»] scaffold0211 (1 HSPs)
scaffold0211 (13-478)||(6876-7341)
[»] scaffold0002 (1 HSPs)
scaffold0002 (13-204)||(161963-162154)
[»] scaffold0544 (1 HSPs)
scaffold0544 (13-474)||(6374-6835)
[»] scaffold0547 (1 HSPs)
scaffold0547 (14-471)||(4064-4521)
[»] scaffold0073 (1 HSPs)
scaffold0073 (13-474)||(61920-62381)
[»] chr4 (3 HSPs)
chr4 (14-471)||(16815738-16816195)
chr4 (151-477)||(16308549-16308875)
chr4 (14-478)||(15203771-15204235)
[»] scaffold0752 (1 HSPs)
scaffold0752 (13-474)||(5352-5813)
[»] chr8 (3 HSPs)
chr8 (77-474)||(23786833-23787230)
chr8 (77-474)||(22153349-22153746)
chr8 (14-477)||(19228200-19228663)
[»] scaffold0738 (1 HSPs)
scaffold0738 (77-402)||(1061-1386)
[»] scaffold0269 (1 HSPs)
scaffold0269 (77-420)||(10441-10784)
[»] scaffold0040 (1 HSPs)
scaffold0040 (76-478)||(72980-73382)
[»] scaffold0387 (1 HSPs)
scaffold0387 (83-478)||(10521-10916)
[»] scaffold0007 (1 HSPs)
scaffold0007 (77-328)||(55774-56025)
[»] scaffold1638 (1 HSPs)
scaffold1638 (290-477)||(1248-1435)
[»] scaffold0739 (1 HSPs)
scaffold0739 (14-402)||(5499-5884)
[»] scaffold0194 (1 HSPs)
scaffold0194 (276-477)||(1016-1217)
[»] scaffold0474 (1 HSPs)
scaffold0474 (386-477)||(2350-2441)
[»] scaffold0016 (1 HSPs)
scaffold0016 (427-477)||(195361-195411)


Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 510
Target Start/End: Complemental strand, 22646608 - 22646111
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  22646608 caaagggaaatcgagaacggaaatgggtctaaaaccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaaca 22646509  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |    
T  22646508 attgctaaagcatgcagatgctcaaatactggcttgtttcaagtggatgccattaaaagccagtgggagaacaagattaatggagtcttgttcaaatgta 22646409  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  22646408 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcagaatgcatctttcagaagggaggaggtactgattatcc 22646309  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  22646308 ttctctggatcacaaggtagttttgtactaccttgctacctttgataggataaatctaccaaagtacatattgcatcatatgtgctgggccttacgggaa 22646209  T
Q  413 agccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatttgaagaactgtcgagt 510  Q
    | ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  22646208 atccagaagaatgaaagaagacagatcccctttggaaggcttctatctgaaatttttgttcaaggacaattgctaaagcatctgaagaactgtggagt 22646111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 77 - 402
Target Start/End: Original strand, 20880066 - 20880391
Alignment:
Q  77 gtgatgggtatggagattatcatcacagtagaaacaattgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagt 176  Q
    ||||||||||||||||||| |||||| || ||||| ||||||||||||||||||||||| | |  ||||  || |||||||||||| || |||| ||| |    
T  20880066 gtgatgggtatggagattaccatcacggtggaaactattgctaaagcatgcagatgctcgattgatggccagtatcaggtggatgcaatcaaaaaccaat 20880165  T
Q  177 gggagaacaagattaatggagtcctgttcaaaggaaatgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcata 276  Q
    ||||| | |||||||||||||| || ||||| ||||||   ||||| |||||| | || |||||||||| ||| ||| |||| ||||||||  | ||| |    
T  20880166 gggaggagaagattaatggagttctattcaatggaaatccaaaagccaaatctgctgacttgtctccaactcataggctgctgaagaagattgtttcaga 20880265  T
Q  277 atgcatctttcagaagggaggaggtactgattctccttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaag 376  Q
    ||| ||||||||||| ||||| ||||||||| |||||||||| ||||||||  | ||| | | ||| || ||||||| ||| |  | ||| || || |||    
T  20880266 atgtatctttcagaaaggaggtggtactgatgctccttctctagatcacaaactggttctatgcttcctggctacctatgagaaaagaaaccttccaaag 20880365  T
Q  377 tacatattgcatcatatgtgctgggc 402  Q
    |||||| |||||||||||||||||||    
T  20880366 tacatactgcatcatatgtgctgggc 20880391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 477
Target Start/End: Complemental strand, 7682972 - 7682509
Alignment:
Q  14 aaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaa 113  Q
    ||||||||||||||||| |||||| || | ||| |||   |||||||  | || |||| || ||||||||| |||||||| |  || || | ||| |  |    
T  7682972 aaagggaaatcaagaacagaaatgagtttgaaaccgtttgaaggaactgagataaggtctgctgtgatgggaatggagatcagtattactgcagacatca 7682873  T
Q  114 ttgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaa 213  Q
    |||| | || |||||||||   ||| ||||| || | ||||||||||||  ||||||||||||||||  ||||| | |||| |||||||||| |||||||    
T  7682872 ttgcaagagtatgcagatgtgaaaacactggtttatatcaggtggatgctgttaaaagccagtgggaagacaaggtcaatgaagtcctgttccaaggaaa 7682773  T
Q  214 tgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcct 313  Q
    ||  || | ||||||||||||  | || ||  |||||| | |  | ||||| ||  | ||| ||||||| || || |||||||||||||| ||||||||     
T  7682772 tgcaaagggaaaatcttcagaactatcacctgttcacaaggttttcaagaaaattctgtcagaatgcattttccaaaagggaggaggtacagattctcca 7682673  T
Q  314 tctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaa 413  Q
    ||| |||||||||||||||||||||||| |||||| || | | | || |||||||| || ||||||||  | ||||| |||||||||||  |   |||||    
T  7682672 tctttggatcacaaggtagttttgtactgtcttgcaacttatcaaagaataaatctgccaaagtacatccttcatcacatgtgctgggctctgaaggaaa 7682573  T
Q  414 gccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagg 477  Q
    |||| ||||| | |||||| ||||| |||||||||||||| || ||||||||||||||||||||    
T  7682572 gccaaaagaatggaagaaggcagattccctttggaaggctactttctgaaatttttgttcaagg 7682509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 510
Target Start/End: Original strand, 3040 - 3537
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||| ||||||||||||| ||||||| ||| |||||||||| ||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  3040 caaagggaaatcgagaacggaaatggttctaaaaccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaaca 3139  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||    
T  3140 attgctaaagcatgcagatgctcaaatactgggatgttttaggtggatgctattaaaagccagtgggagaacaagattaatggagtcttgttcaaaagaa 3239  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  3240 atgctaaagcaaaatcatcagatttgtctccaattcacaggatgcttaagaagatcttatcagaatgcatctttcagaagggaggaggtactgattatcc 3339  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||    
T  3340 ttctctggatcacaaggtagttttgtactaccttgctacctttgataggataaatctaccaaagtacatattgcatcatatgtgctgggctatacgggaa 3439  T
Q  413 agccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatttgaagaactgtcgagt 510  Q
    ||||||||||| |||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  3440 agccagaagaatgaaaaaaggcagatcccctatggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatctgaagaattgtggagt 3537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 510
Target Start/End: Original strand, 24811096 - 24811593
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||| ||||||||||||| ||||||| ||| |||||||||| ||||||||| || |||||||||||||||||||| ||||||||||||||||    
T  24811096 caaagggaaatcgagaacggaaatggttctaaaaccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaaca 24811195  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||    
T  24811196 attgctaaagcatgcagatgctcaaatactgggatgttttaggtggatgctattaaaagccagtgggagaacaagattaatggagtcttgttcaaaagaa 24811295  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  24811296 atgctaaagcaaaatcatcagatttgtctccaattcacaggatgcttaagaagatcttatcagaatgcatctttcagaagggaggaggtactgattatcc 24811395  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||    
T  24811396 ttctctggatcacaaggtagttttgtactaccttgctacctttgataggataaatctaccaaagtacatattgcatcatatgtgctgggctatacgggaa 24811495  T
Q  413 agccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatttgaagaactgtcgagt 510  Q
    ||||||||||| |||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  24811496 agccagaagaatgaaaaaaggcagatcccctatggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatctgaagaattgtggagt 24811593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 13 - 510
Target Start/End: Original strand, 19309370 - 19309867
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||||||||| ||||||||||||| | | | ||| |||||| ||||||| |  |  |||||| ||||||| |||| ||||||||| ||||||    
T  19309370 caaagggaaatcaagaacagaaatgggtctaagaccattcaatggaacagaaatcagatcagcagtgatgtgtatggaaattaccatcacagtggaaaca 19309469  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    || |||| |||||| ||||||||||||  ||||  |||||| || ||||  |||||| |||| |||||||| |||||||||||| ||||  |||||||||    
T  19309470 atcgctagagcatgtagatgctcaaatgatggccagtttcaagtagatgttattaaaggccaatgggagaagaagattaatggattcctaatcaaaggaa 19309569  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    ||   |||||||||||||  || |||||||||| ||| |||||||| ||||||||| ||||| ||||||| |||||||||||| |||||| |||||||||    
T  19309570 atccaaaagcaaaatcttttgacttgtctccaactcataggatgctgaagaagatcctatcagaatgcatttttcagaagggatgaggtattgattctcc 19309669  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    |||||||||||||||| | ||| ||| ||| ||||| || ||||| |   ||||||| || ||||| |||||||||||||||||||||||  |  |||||    
T  19309670 ttctctggatcacaagctggttctgttcttccttgccacttttgagaaagtaaatcttccaaagtatatattgcatcatatgtgctgggctctgagggaa 19309769  T
Q  413 agccagaagaa-agaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatttgaagaactgtcgagt 510  Q
    ||||| |||||  |  ||||||||||| |||||||||||||||||||||||||| || |||||||||||  || | | |||| ||||||||||| ||||    
T  19309770 agcca-aagaactggtagaagacagattccctttggaaggcttctgtctgaaatcttcgttcaaggacagctgttgatgcatctgaagaactgtggagt 19309867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 475
Target Start/End: Original strand, 21168876 - 21169337
Alignment:
Q  14 aaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaa 113  Q
    ||||||||||||||||| ||||||||| | ||| |||   |||||||  | || |||| || ||||||||| |||||||| |  || || | ||| |  |    
T  21168876 aaagggaaatcaagaacagaaatgggtttgaaaccgtttgaaggaactgagataaggtctgctgtgatgggaatggagatcagtattactgcagacatca 21168975  T
Q  114 ttgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaa 213  Q
    |||| | || |||||||||   ||| ||||| || | ||||||||||||  ||||||||||||||||  ||||| | |||| |||||||||| |||||||    
T  21168976 ttgcaagagtatgcagatgtgaaaacactggtttatatcaggtggatgctgttaaaagccagtgggaagacaaggtcaatgaagtcctgttctaaggaaa 21169075  T
Q  214 tgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcct 313  Q
    || ||| | ||||||||||||  | || ||  |||||| | |  | ||||||||  | ||| ||||||| || || |||||||||||||| |||  |||     
T  21169076 tgctaagggaaaatcttcagaactatcacctgttcacaaggttttcaagaagattatgtcagaatgcattttccaaaagggaggaggtacagatagtcca 21169175  T
Q  314 tctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaa 413  Q
    ||| |||||||||||||||||||||||| |||||| || | | | || |||||||| || ||||||||  | ||||| |||||||||||| |   |||||    
T  21169176 tctttggatcacaaggtagttttgtactgtcttgcaacttatcaaagaataaatctgccaaagtacatccttcatcacatgtgctgggcactgaaggaaa 21169275  T
Q  414 gccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaa 475  Q
    |||| ||||| | |||||| ||||| ||||||||||| || || ||||||||||||||||||    
T  21169276 gccaaaagaatggaagaaggcagattccctttggaagactactttctgaaatttttgttcaa 21169337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 14 - 477
Target Start/End: Original strand, 24421920 - 24422383
Alignment:
Q  14 aaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaa 113  Q
    ||||||||||||||||| ||||||||| | ||| |||   |||||||  | || |||| || ||||||||| |||||||| |  || || | ||| |  |    
T  24421920 aaagggaaatcaagaacagaaatgggtttgaaaccgtttgaaggaacggagataaggtctgctgtgatgggaatggagatcactattactgcagacatca 24422019  T
Q  114 ttgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaa 213  Q
    |||| | || |||||||||   ||| ||||| || | ||||||||||||  ||||||||||||||||  ||||| | |||| |||||||||| |||||||    
T  24422020 ttgcaagagtatgcagatgtgaaaacactggtttatatcaggtggatgctgttaaaagccagtgggaagacaaggtcaatgaagtcctgttccaaggaaa 24422119  T
Q  214 tgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcct 313  Q
    || ||| | ||||||||||||  | || ||  |||||| | |  | ||||| ||  | ||| ||||||| || ||||||||||||||||| |||| |||     
T  24422120 tgctaagggaaaatcttcagaactatcacctgttcacaaggttttcaagaaaattatgtcagaatgcattttccagaagggaggaggtacagattatcca 24422219  T
Q  314 tctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaa 413  Q
    ||| |||||||||||||||||||||| |  ||||| || | | | |  |||||||| || ||||||||  | ||||| ||||| |||||  |  ||||||    
T  24422220 tctttggatcacaaggtagttttgtattgccttgcaacttatcaaaaaataaatctgccaaagtacatccttcatcacatgtgttgggctctgagggaaa 24422319  T
Q  414 gccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagg 477  Q
    |||| ||||| | |||||| ||||| |||| |||||| || || ||||||||||||||||||||    
T  24422320 gccaaaagaatggaagaaggcagattccctatggaagactactctctgaaatttttgttcaagg 24422383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 503
Target Start/End: Complemental strand, 108768 - 108278
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||||||||||||||||||||||| | ||| |||||||||| ||||||||| |  |||||||||||||||||||| ||||||||||||||||    
T  108768 caaagggaaatcaagaacggaaatgggtctaagaccgttcaaaggaacagaaatcaggtctactgtgatgggtatggagattaccatcacagtagaaaca 108669  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    |||||||||||||||||||||||||||  |||| ||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  108668 attgctaaagcatgcagatgctcaaatgatggcctgtttcaagtggatgctattaaaagccagtgggagaaaaagattaatggagtcctgttcaaaggaa 108569  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  108568 atgtcaaagcaaaatcttcagacttgtccccaattcacaggatgctcaagaaaatcttatcagaatgcatttttcagaagggaggaggtactgattctcc 108469  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    |||||||||||||||| | ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  108468 ttctctggatcacaagttggttctgtacttccttgctacctttgataggataaatctaccaaagtacatattgcatcatatatgctgggcattacgggaa 108369  T
Q  413 agccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatttgaagaact 503  Q
    |||||||| || | |||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  108368 agccagaataatggaagaaggcagatcccttttggaaggcttttgtctgaaatttttgttcaaggacaattgctaaagcatctgaagaact 108278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 510
Target Start/End: Original strand, 13181157 - 13181654
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||||||||||||||||||| ||||| | | |||||||||| ||||||||| || |||||||||||||||||||| |||||||||||||| |    
T  13181157 caaagggaaatcaagaacggaaatgggtttaaaaccattcaaaggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaata 13181256  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    |||||||||||||||||||||||||||  |||||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||||| ||||||||||    
T  13181257 attgctaaagcatgcagatgctcaaatgatggcttgtttcaagtggatgctattaaaagctagtgggagaaaaagattaatggagtcctattcaaaggaa 13181356  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  13181357 atgtcaaagcaaaatcttcagacttgtctccaattcacaggatgctcaagaagattttatcagaatgcatctttcagaagggaggaggtactgattctcc 13181456  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    |||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  13181457 ttctttggatcacaagttggttttgtacttccttgctacctttgataggataaatctaccaaagtacatattgcatcatatgcgctgggcattacgggaa 13181556  T
Q  413 agccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatttgaagaactgtcgagt 510  Q
    ||| |||| || | ||||||| ||||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||    
T  13181557 agctagaataatggaagaagatagatcccttttggaaggcttttgtctaaaattttcgttcaaggacaattgctaaagcatctgaagaactgtggagt 13181654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 151 - 477
Target Start/End: Original strand, 15884999 - 15885325
Alignment:
Q  151 tcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaatgttaaagcaaaatcttcagatttgtctccaattcac 250  Q
    ||||||||| ||  |||| |||||||||||  ||||| | |||| |||||||||| |||||||||  || | ||||||||||||  | || ||  |||||    
T  15884999 tcaggtggaagctgttaagagccagtgggaagacaaggtcaatgaagtcctgttccaaggaaatgcaaagggaaaatcttcagaactatcacctgttcac 15885098  T
Q  251 aggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctccttctctggatcacaaggtagttttgtactttcttgcta 350  Q
    | | |  | ||||| ||  | ||| ||||||| || || |||||||||||||| ||| |||| ||| ||||||||||||||||| ||||||  ||||| |    
T  15885099 aaggttttcaagaaaattctgtcagaatgcattttccaaaagggaggaggtacagatgctccatctttggatcacaaggtagttatgtactgccttgcaa 15885198  T
Q  351 cctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaagccagaagaaagaaagaagacagatcccctttggaag 450  Q
    | | | | || |||||| | || ||||| ||  | |||||||||||||||||  |   ||||||||| ||||| | |||||| || || |||||||||||    
T  15885199 cttatcaaagaataaatttgccaaagtatatccttcatcatatgtgctgggctctgaaggaaagccaaaagaacggaagaaggcaaattccctttggaag 15885298  T
Q  451 gcttctgtctgaaatttttgttcaagg 477  Q
    ||| |  ||||||||||||||||||||    
T  15885299 gctacattctgaaatttttgttcaagg 15885325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 510
Target Start/End: Original strand, 19458368 - 19458862
Alignment:
Q  16 agggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaatt 115  Q
    |||||||||||||||||||||||||||||  |||| |||||| | | ||||||||| || |||||||||||||||||||| ||||||||||||||||||     
T  19458368 agggaaatcaagaacggaaatgggtctaagttcgttcaaaggtatagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaacaatc 19458467  T
Q  116 gctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaatg 215  Q
    ||||||||||||| ||||||||||  |||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  19458468 gctaaagcatgcaaatgctcaaatgatggcttatttcaagtggatgctattaaaagccagtgggagaaaaagattaatggagtcatgttcaaaggaaatg 19458567  T
Q  216 ttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctccttc 315  Q
    | ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  19458568 tcaaagcaaaatcttcagacttgtctccaattcacaggatgctcaagaagattttatcagaatgcatttttcagaagggaggaggtactgattctccttc 19458667  T
Q  316 tctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaagc 415  Q
    ||||||||||||| | ||| ||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  19458668 tctggatcacaagttggttctgtacttcctcgctacctttgataggataaatctaccaaagtacatattgcatcatatgtgctgggcattatgggaaagc 19458767  T
Q  416 cagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatttgaagaactgtcgagt 510  Q
    || || |  | |||||||||||| || |||||| ||||| |||||||||| ||||||||||||||| | ||||||||| ||||||||||| ||||    
T  19458768 caaaatagtggaagaagacagattccttttggatggcttttgtctgaaatctttgttcaaggacaactactaaagcatctgaagaactgtggagt 19458862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 510
Target Start/End: Complemental strand, 1654614 - 1654118
Alignment:
Q  14 aaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaa 113  Q
    ||||| |||||||| |  ||||||||||| ||| ||| || ||||||| |||| |||| || |||||||||||||||||||| |||||| ||||||||||    
T  1654614 aaaggaaaatcaaggatagaaatgggtctcaaaccgttcataggaacaaaaattaggtctgctgtgatgggtatggagattaccatcactgtagaaacaa 1654515  T
Q  114 ttgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaa 213  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||||||||||||| ||||||||| ||||||| ||||||| |||||    
T  1654514 ttgctaaagcatgcagatgctccaattctggcttgtttcaggtggatgctgttaaaagccagtgggaggacaagattactggagtcttgttcaatggaaa 1654415  T
Q  214 tgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcct 313  Q
    || ||||  |||| | ||| |  ||||| | |||||||||||||||  |||| | |||||| ||||||| ||||||||||||||||||||||||  ||||    
T  1654414 tgctaaaataaaaacatcaaaaatgtcttcgattcacaggatgcttctgaaggttttatcagaatgcatttttcagaagggaggaggtactgatcatcct 1654315  T
Q  314 tctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaa 413  Q
    |||||||||||||||||| | |||||||  |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| |||  || ||||||    
T  1654314 tctctggatcacaaggtaatattgtactgccttgcttcctttgagaggataaatctaccaaagtacatattgcatcatatgtgctaggctataagggaaa 1654215  T
Q  414 gccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatttgaagaactgtcgagt 510  Q
    |||| | ||  |  ||||| ||||| || ||||||||  | || ||| ||| ||||||||| |||   ||||| |||||| ||||||||||| ||||    
T  1654214 gccaaaggagtgggagaaggcagattccttttggaagattcctttctaaaaattttgttcatggaaggttgctgaagcatctgaagaactgtggagt 1654118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 77 - 474
Target Start/End: Complemental strand, 18547143 - 18546753
Alignment:
Q  77 gtgatgggtatggagattatcatcacagtagaaacaattgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagt 176  Q
    ||||||||||||||||||  |||||| || || |||||||||| |||||||||||||||||||  ||||  || |||||||||||| || |||   || |    
T  18547143 gtgatgggtatggagattcccatcacggtggatacaattgctagagcatgcagatgctcaaatgatggccagtatcaggtggatgcaatcaaagcacaat 18547044  T
Q  177 gggagaacaagattaatggagtcctgttcaaaggaaatgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcata 276  Q
    ||||| | ||||||||||||||  ||       |||||   ||||| |||||| | || || ||||||| ||| ||| |||| ||||||||  | ||| |    
T  18547043 gggaggagaagattaatggagttttg-------gaaatccaaaagccaaatctactgacttatctccaactcataggttgctgaagaagattgtctcaga 18546951  T
Q  277 atgcatctttcagaagggaggaggtactgattctccttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaag 376  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||||| | ||| ||| |||| |||| |||| ||| | ||||||||| || |||    
T  18546950 atgcatctttcagaaaggaggtggtactggttctccttctctggatcacaagctggttctgtgctttattgccacctatgagaagataaatcttccaaag 18546851  T
Q  377 tacatattgcatcatatgtgctgggcattacgggaaagccagaagaa-agaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttca 474  Q
    ||||||||||||||||| ||||||||  |  ||||||| || |||||  |  ||||||||||| || |||||||||||| |||||||||| ||||||||    
T  18546850 tacatattgcatcatatttgctgggctctgagggaaagtca-aagaattggtagaagacagattccttttggaaggcttttgtctgaaatctttgttca 18546753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 176 - 474
Target Start/End: Complemental strand, 17783214 - 17782916
Alignment:
Q  176 tgggagaacaagattaatggagtcctgttcaaaggaaatgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcat 275  Q
    |||||||| ||||||| || ||| || ||||| ||||||   ||||| |||||||| || |||||||||| ||| ||| |||| ||||||||  | |||     
T  17783214 tgggagaagaagattactgaagttctattcaatggaaatccaaaagccaaatcttctgacttgtctccaactcatagggtgctgaagaagattgtctcag 17783115  T
Q  276 aatgcatctttcagaagggaggaggtactgattctccttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaa 375  Q
    |||||||||||||||| ||||| ||||||||| |||||||| ||||||||||| | ||||||| |||||||||||||| ||| || ||||| || || ||    
T  17783114 aatgcatctttcagaaaggaggtggtactgatgctccttctttggatcacaagctggttttgtgctttcttgctacctatgaaagaataaaccttccaaa 17783015  T
Q  376 gtacatattgcatcatatgtgctgggcattacgggaaagccagaagaa-agaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttca 474  Q
    |||||||||||||||||||||||||||  |  ||||||| || |||||  |  ||||||||||| || |||||||| ||| | |||||||| ||||||||    
T  17783014 gtacatattgcatcatatgtgctgggctctgagggaaagtca-aagaattggtagaagacagattccttttggaagacttttatctgaaatctttgttca 17782916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 478
Target Start/End: Original strand, 25683212 - 25683550
Alignment:
Q  140 actggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaatgttaaagcaaaatcttcagatttgt 239  Q
    |||||||| | |||||||||||   |||||  |||||||||  ||||||||||||  || ||||   |||||| || ||| | ||||||| |  | || |    
T  25683212 actggcttatatcaggtggatgttgttaaagaccagtgggatgacaagattaatgctgttctgtatcaaggaactgctaagggaaaatctgctaagttat 25683311  T
Q  240 ctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctccttctctggatcacaaggtagttttgta 339  Q
    |||||||||| ||| | || ||||| ||  | ||| |||| || || |||||||||||||||||  || |||||||| ||||||||||||| ||| | ||    
T  25683312 ctccaattcataggcttctgaagaaaattctttcagaatgtattttccagaagggaggaggtacaaatgctccttctttggatcacaaggttgttctata 25683411  T
Q  340 ctttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaagccagaagaaa-gaaagaagacagat 438  Q
     |  ||||| ||||   | || |||||||| || |||||||| || ||||| ||||||||||||||  |||||||||| |||||  | ||| ||||||||    
T  25683412 ttgccttgcaacctaccaaagaataaatctgcctaagtacatcttacatcacatgtgctgggcattgagggaaagcca-aagaattggaaggagacagat 25683510  T
Q  439 cccctttggaaggcttctgtctgaaatttttgttcaagga 478  Q
     ||||||||||||||||| ||||| || ||||||||||||    
T  25683511 tccctttggaaggcttctttctgagatctttgttcaagga 25683550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 14066813 - 14066919
Alignment:
Q  359 aggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaagccagaagaaagaaagaagacagatcccctttggaaggcttctgt 458  Q
    ||||||||  |||| ||||||||  |||||||||||||||||||  || ||||||||||||||||||| ||||||||||| |||| |||||| || ||||    
T  14066813 aggataaacttacctaagtacattatgcatcatatgtgctgggctataagggaaagccagaagaaagacagaagacagattccctatggaagactcctgt 14066912  T
Q  459 ctgaaat 465  Q
    | |||||    
T  14066913 cagaaat 14066919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 17783284 - 17783230
Alignment:
Q  85 tatggagattatcatcacagtagaaacaattgctaaagcatgcagatgctcaaat 139  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  17783284 tatggagattaccatcacagtagaaactattgctaaagcatgcagatgcccaaat 17783230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 17050862 - 17050812
Alignment:
Q  427 aagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagg 477  Q
    |||||||||||| || ||||||||| |||| ||||||||||||||| ||||    
T  17050862 aagaagacagattccttttggaagggttctatctgaaatttttgttaaagg 17050812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 199 - 510
Target Start/End: Complemental strand, 13134989 - 13134678
Alignment:
Q  199 cctgttcaaaggaaatgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggagga 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13134989 cctgttcaaaggaaatgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggagga 13134890  T
Q  299 ggtactgattctccttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgct 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13134889 ggtactgattctccttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgct 13134790  T
Q  399 gggcattacgggaaagccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatttgaa 498  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13134789 gggcattaccggaaagccagaagaatgaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatctgaa 13134690  T
Q  499 gaactgtcgagt 510  Q
    ||||||| ||||    
T  13134689 gaactgtggagt 13134678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 13 - 478
Target Start/End: Complemental strand, 15837124 - 15836659
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    ||||||||||||||| || ||||||||||| ||| | | ||| || ||  | || |||| || ||||||||||||||| |||| |||||| |||||||||    
T  15837124 caaagggaaatcaaggactgaaatgggtcttaaaccattcaatggtacggagataaggtctgctgtgatgggtatggaaattaccatcactgtagaaaca 15837025  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    ||||||||||||||||  ||| | ||| ||||||||||||||||||| |   |||||| |||||||||||||||||||| |  |||| | ||||||||||    
T  15837024 attgctaaagcatgcaattgccccaattctggcttgtttcaggtggacgttgttaaaaaccagtgggagaacaagattactacagtcttattcaaaggaa 15836925  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    | | |||||| ||| | ||  |  ||||| ||  ||||| |||||||  |||||| |||||| | ||||| ||||| ||||||||||||||||||| |||    
T  15836924 acgctaaagctaaaacatcgaaaatgtcttcagctcacatgatgcttctgaagattttatcagactgcatttttcaaaagggaggaggtactgattatcc 15836825  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    |||||| |||||||||||||| || ||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || |||||    
T  15836824 ttctctagatcacaaggtagtattatactgccttgctacctttgataggataaatctaccaaagtacatattgcatcatatgtgctgggaaataagggaa 15836725  T
Q  413 agccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagga 478  Q
    ||||||| ||  | |||||| ||||||||||||||||| ||||| ||||| |||||||||||||||    
T  15836724 agccagaggattggaagaaggcagatcccctttggaagacttctttctgagatttttgttcaagga 15836659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 13143013 - 13142822
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13143013 caaagggaaatcaagaacggaaatgggtctaaaaccgtgcaaaggaacagaaatcaggtctgttgtgatgggtatggagattatcatcacagtagaaaca 13142914  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgtt 204  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13142913 attgctaaagcttgcagatgctcaaatactgacttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgtt 13142822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 478
Target Start/End: Original strand, 15657553 - 15658017
Alignment:
Q  14 aaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaa 113  Q
    ||||| ||||| ||||||||||||||| | ||| ||| | | || ||  | || |||| |||||||||||| |||||||| | | |||| | |||||| |    
T  15657553 aaaggaaaatctagaacggaaatgggtttgaaaccgttcgagggtactgagataaggtttgttgtgatgggaatggagatcaccctcactgcagaaacta 15657652  T
Q  114 ttgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaa 213  Q
    |||||| || |||||||||   ||| |  || || | | ||||||| ||  |||||||| |||||||  ||||| |||||| |||| |||   |||||||    
T  15657653 ttgctagagtatgcagatgtgaaaacatcggtttatattaggtggaagctgttaaaagctagtgggaagacaaggttaatgaagtcttgtatcaaggaaa 15657752  T
Q  214 tgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcct 313  Q
    || ||||||||||||||||||  |||||||  |||| ||| | || ||||| ||  | | | ||||||| || || ||||||| ||||||||||| ||||    
T  15657753 tgctaaagcaaaatcttcagagctgtctcctgttcataggcttctgaagaaaattctttaagaatgcattttccataagggagaaggtactgattatcct 15657852  T
Q  314 tctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaa 413  Q
    ||| ||||||||||| ||||| |||| |  ||||| || ||| | ||||||||||| || ||||||||  | |||||||||||||||||  |  ||||||    
T  15657853 tctttggatcacaagatagttctgtattgccttgcaacatttcaaaggataaatctgccaaagtacatcctacatcatatgtgctgggctctgagggaaa 15657952  T
Q  414 gccagaagaaa-gaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagga 478  Q
     ||| |||||| | |||||||||||| ||||||||||||||| | ||  | |||||||||||||||    
T  15657953 acca-aagaaatggaagaagacagattccctttggaaggcttttatccaagatttttgttcaagga 15658017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 151 - 477
Target Start/End: Original strand, 11213184 - 11213510
Alignment:
Q  151 tcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaatgttaaagcaaaatcttcagatttgtctccaattcac 250  Q
    ||||||||||||  ||||||||||||||||  ||||| | |||| |||||||||  |||||||||  || | ||||||||||||  | || ||  |||||    
T  11213184 tcaggtggatgctgttaaaagccagtgggaagacaaggtcaatgaagtcctgtttcaaggaaatgcaaagggaaaatcttcagaactatcacctgttcac 11213283  T
Q  251 aggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctccttctctggatcacaaggtagttttgtactttcttgcta 350  Q
    | | |  | ||||| ||  | ||| ||||||| || |||||||||||||||||  ||| ||| ||| ||||||||||||||||||||||||  ||||| |    
T  11213284 aaggttttcaagaaaattctgtcagaatgcattttccagaagggaggaggtacatattatccatctttggatcacaaggtagttttgtactgccttgcaa 11213383  T
Q  351 cctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaagccagaagaaagaaagaagacagatcccctttggaag 450  Q
    | | | | || |||||||| || ||||||||  | ||||| |||||||||||  |   ||||||||| ||||| | |||||| ||||| |||||||||||    
T  11213384 cttatcaaagaataaatctgccaaagtacatccttcatcacatgtgctgggctctgaaggaaagccaaaagaatggaagaaggcagattccctttggaag 11213483  T
Q  451 gcttctgtctgaaatttttgttcaagg 477  Q
    ||| || ||||||||||||||||||||    
T  11213484 gctactctctgaaatttttgttcaagg 11213510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 14 - 478
Target Start/End: Original strand, 14318007 - 14318471
Alignment:
Q  14 aaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaa 113  Q
    ||||||||||| ||||| ||||||||| | ||| |||   |||| ||  | || |||| || ||||||||| |||||||| | |||||| | ||| |  |    
T  14318007 aaagggaaatccagaacagaaatgggtttgaaaccgtttgaaggtacggagataaggtctgctgtgatgggaatggagatcaccatcactgcagacatca 14318106  T
Q  114 ttgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaa 213  Q
    |||| | || |||||||||   ||| || || || | ||||||||||||  ||||||||||||||||  ||||| |||||| |||||||||  |||||||    
T  14318107 ttgcaagagtatgcagatgtgaaaacaccggtttatatcaggtggatgctgttaaaagccagtgggaagacaaggttaatgaagtcctgtttcaaggaaa 14318206  T
Q  214 tgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcct 313  Q
       ||| | ||||||||||||  |||| ||  || | | ||| || ||||| ||  | ||| ||||||| || |||||||||||||||||  ||| |||     
T  14318207 cactaaggaaaaatcttcagaactgtcacctgttaataagattctgaagaaaattctttcagaatgcattttccagaagggaggaggtacaaattatcca 14318306  T
Q  314 tctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaa 413  Q
    ||  |||||||||||||||||||||| |  ||||| || | | | ||||||||||| || ||||||||  | ||||| |||||||||||  |   |||||    
T  14318307 tcattggatcacaaggtagttttgtattgccttgcaacttatcaaaggataaatctgccaaagtacatcctacatcacatgtgctgggccctgaaggaaa 14318406  T
Q  414 gccagaagaaa-gaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagga 478  Q
    || | |||||| | |||||| ||||| ||||||||||||||||| || || |||||||||||||||    
T  14318407 gcta-aagaaatggaagaaggcagattccctttggaaggcttctttccgagatttttgttcaagga 14318471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 502
Target Start/End: Complemental strand, 24312 - 23823
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||| ||  ||||||||||||| ||| ||| || |||||||||||| |||| || ||||||||||||||||||||||||||  |||||||||    
T  24312 caaagggaaatcgagggcggaaatgggtctcaaaccgttcagaggaacataaattaggtctgctgtgatgggtatggagattatcatcattgtagaaaca 24213  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||  |||||||||| ||||||| |||||||||||||||| |||||||  |||    
T  24212 attgctaaagcatgcagatgctccaattctggcttgtttcaggtggatgctgttaaaagccaatgggagagcaagattaatggagtcttgttcaatagaa 24113  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    ||| |||||||||||| |||||  ||||| ||| ||||||| | ||||||||||| |||||| ||||||| ||||||||||||||||||||||||| |||    
T  24112 atgctaaagcaaaatcatcagaaatgtcttcaaatcacagggtacttaagaagatattatcagaatgcatttttcagaagggaggaggtactgattatcc 24013  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    ||||||||||||||||||||| |||||||  |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||  || |||||    
T  24012 ttctctggatcacaaggtagtattgtactgccttgctacctttgagaggataaatctaccaaagtacatattgcatcatatgtgctgggctataagggaa 23913  T
Q  413 agccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatttgaagaac 502  Q
    ||| ||||||| | |||||| |||||||||| |||||||||||| ||||||||||||||||||||| |  |||| |||||| ||||||||    
T  23912 agctagaagaatggaagaaggcagatcccctatggaaggcttctttctgaaatttttgttcaaggaaagctgctgaagcatctgaagaac 23823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 477
Target Start/End: Complemental strand, 23481977 - 23481513
Alignment:
Q  14 aaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaa 113  Q
    ||||||||||||||||||||||||||| | ||  ||| |||||||||| ||||||||| || |||||||||||||||||||| |||||||||||||||||    
T  23481977 aaagggaaatcaagaacggaaatgggtttgaatccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaacaa 23481878  T
Q  114 ttgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaa 213  Q
    ||||||||||||||||||||||||| |||||  ||||||| ||||| ||  ||||| ||||||||||| ||||||| ||||||||| |||||||||||||    
T  23481877 ttgctaaagcatgcagatgctcaaacactggtctgtttcaagtggacgctgttaaatgccagtgggaggacaagataaatggagtcttgttcaaaggaaa 23481778  T
Q  214 tgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgca-tctttcagaagggaggaggtactgattctcc 312  Q
    || ||| |||||||| ||| |||||||||||||||| |||||||| ||||||||| ||||| |||||| | ||||||||||||||||||| ||||| |||    
T  23481777 tgctaaggcaaaatcatcaaatttgtctccaattcataggatgctcaagaagatcctatcaaaatgcattttttcagaagggaggaggtattgattatcc 23481678  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    |||| ||||||||||||||||| ||||||  |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |||||    
T  23481677 ttctttggatcacaaggtagttctgtactgccttgctacctttgaaaggataaatctaccaaagtacatattgcatcatatgtgctgggcgttaagggaa 23481578  T
Q  413 agccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagg 477  Q
    ||| ||| ||| | |||||||||||| ||||||||||||||||||||||| || |||||||||||    
T  23481577 agctagaggaatggaagaagacagattccctttggaaggcttctgtctgagatctttgttcaagg 23481513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 13527087 - 13526698
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||||||||| ||||||||||||| | | | ||| |||||| |||| || |  |  ||||||||||||||||||| |||||| || ||||||    
T  13527087 caaagggaaatcaagaacagaaatgggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggagattaccatcacggtggaaaca 13526988  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    |||| || ||||||||||||||| | |  | ||   ||||| |||||||| ||||||  ||| |||||||| |||||||||||||| |||||||||||||    
T  13526987 attgttatagcatgcagatgctcgattgattgccaatttcaagtggatgctattaaagaccaatgggagaaaaagattaatggagttctgttcaaaggaa 13526888  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    ||   ||| | |||||||| || |||||||||| ||| |||||| | ||||||||| | | | |||| |||||||||||||||||||| |||||||||||    
T  13526887 atccaaaatccaaatcttctgacttgtctccaactcataggatgttgaagaagatccttttagaatgtatctttcagaagggaggaggaactgattctcc 13526788  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggc 402  Q
    |||||| ||||||||| | ||| ||| ||| ||||| |||| ||| |   | ||||| || ||||||||| |||||||||||||||||||    
T  13526787 ttctctagatcacaagctggttctgttcttccttgcaacctatgagaaagtgaatcttccaaagtacatactgcatcatatgtgctgggc 13526698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 14 - 478
Target Start/End: Original strand, 21672940 - 21673404
Alignment:
Q  14 aaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaa 113  Q
    ||||| ||||| ||||||||||||||| | ||| ||| ||| || ||  |||| |||| || ||||||||| |||||||| | |||||| | |||||| |    
T  21672940 aaaggaaaatctagaacggaaatgggtttgaaaccgttcaatggtactgaaataaggtctgctgtgatgggaatggagatcaccatcactgcagaaacta 21673039  T
Q  114 ttgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaa 213  Q
    |||||| || |||||||||   ||| || || || | ||||||||||||  ||||||||||||||||  ||||| |||||| |||  |||   | |||||    
T  21673040 ttgctagagtatgcagatgtgaaaacaccggtttatatcaggtggatgctgttaaaagccagtgggaagacaaggttaatgaagttttgtatcagggaaa 21673139  T
Q  214 tgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcct 313  Q
    || ||| | |||||||||||| ||||| ||  |||| | | | || ||||| ||  | ||| ||||||| || |||||||||||||||||| ||| ||||    
T  21673140 tgctaagggaaaatcttcagagttgtcacctgttcataagcttctgaagaaaattgtttcagaatgcattttccagaagggaggaggtactaattatcct 21673239  T
Q  314 tctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaa 413  Q
    ||| || |||||||||||||| | || |  ||||| || ||| | ||||||||||| || ||||||||  | |||||||||||||||||  |  ||||||    
T  21673240 tctttgaatcacaaggtagttctatattgccttgcaacatttcaaaggataaatctgccaaagtacatcctacatcatatgtgctgggctctgagggaaa 21673339  T
Q  414 gccagaagaaa-gaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagga 478  Q
    |||| |||||| | ||| |||||||| || |||||||||||| | || || |||||||||||||||    
T  21673340 gcca-aagaaatggaaggagacagattccttttggaaggcttttatccgagatttttgttcaagga 21673404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 14 - 402
Target Start/End: Original strand, 19470973 - 19471361
Alignment:
Q  14 aaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaa 113  Q
    ||||||||||||||||| ||||||||| | ||| |||   |||||||  | || |||| || ||||||||| |||||||| |  || || | ||| |  |    
T  19470973 aaagggaaatcaagaacagaaatgggtttgaaaccgtttgaaggaactgagataaggtctgctgtgatgggaatggagatcactattactgcagacatca 19471072  T
Q  114 ttgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaa 213  Q
    |||| | ||||||||||||   ||| ||||| || | ||||||||||||  ||||||||||||||||| ||||| | |||| |||||||||| |||||||    
T  19471073 ttgcaagagcatgcagatgtgaaaacactggtttatatcaggtggatgctgttaaaagccagtgggaggacaaggtcaatgaagtcctgttccaaggaaa 19471172  T
Q  214 tgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcct 313  Q
    || ||| | ||||||||||||  | || ||  |||||| | |  | ||||| ||  | ||| ||||||| || || |||||||||||||| |||| |||     
T  19471173 tgctaagggaaaatcttcagaactatcacctgttcacaaggttttcaagaaaattctgtcagaatgcattttccaaaagggaggaggtacagattatcca 19471272  T
Q  314 tctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggc 402  Q
    | | ||||||||||||||||||||||||  ||||| || | | | || |||||||| || ||||||||  | ||||| |||||||||||    
T  19471273 tatttggatcacaaggtagttttgtactgccttgcaacttatcaaagaataaatctgccaaagtacatccttcatcacatgtgctgggc 19471361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 477
Target Start/End: Original strand, 19474944 - 19474988
Alignment:
Q  433 acagatcccctttggaaggcttctgtctgaaatttttgttcaagg 477  Q
    |||||| |||||||||||||| || ||||||||||||||||||||    
T  19474944 acagattccctttggaaggctactctctgaaatttttgttcaagg 19474988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 13007 - 12600
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||||||||||||||||||||||| | | | ||| |||||| ||||||||| || |||||||||||||||||||| ||||||||| ||||||    
T  13007 caaagggaaatcaagaacggaaatgggtctaagaccatccaatggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtcgaaaca 12908  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    || ||||||||||||||||||||||||  |||||| ||||| || ||||| |||||| |||| |||||||| ||||||||||||||||| ||||||||||    
T  12907 atcgctaaagcatgcagatgctcaaatgatggcttatttcaagtagatgctattaaaggccaatgggagaagaagattaatggagtcctattcaaaggaa 12808  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    ||||||||||||||||||  || ||||||||||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  12807 atgttaaagcaaaatcttttgacttgtctccaattcacaggatgctcaagaagattttatcagaatgcatttttcagaagggaggaggtactgattctcc 12708  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    |||||||||||||||| | ||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||    
T  12707 ttctctggatcacaagctggttctgtacttccttgctacctttgataggataaatcttccaaagtacatattgcatcatatgtgctgggcattacgagaa 12608  T
Q  413 agccagaa 420  Q
    ||||||||    
T  12607 agccagaa 12600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 510
Target Start/End: Complemental strand, 12579 - 12521
Alignment:
Q  452 cttctgtctgaaatttttgttcaaggacaattgctaaagcatttgaagaactgtcgagt 510  Q
    |||||||||||||| || ||||||||||| ||| | |||||| ||||||||||| ||||    
T  12579 cttctgtctgaaatcttcgttcaaggacagttgttgaagcatctgaagaactgtggagt 12521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 13 - 510
Target Start/End: Original strand, 1169 - 1666
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||||||||| ||||||||||||||| | | ||| ||||||||||| ||||  || |||||||||||||| || | ||||| ||| ||||||    
T  1169 caaagggaaatcaagaacagaaatgggtctaaaaccattcaatggaacataaataaggtcagtagtgatgggtatggaaatcaccatcatagtggaaaca 1268  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    ||||||| |||||||||||||||||||  ||||   ||||| |||||||| | |||| |||| |||||||| ||||||||||||||| | ||||||||||    
T  1269 attgctagagcatgcagatgctcaaatgatggccaatttcaagtggatgctagtaaaggccaatgggagaagaagattaatggagtcatattcaaaggaa 1368  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    |||| |||||||||||||  || ||||||||||||||||||||||| ||||||||  ||||| ||||||| ||| |||||||||||||||||||||||||    
T  1369 atgtaaaagcaaaatcttgtgacttgtctccaattcacaggatgctgaagaagattgtatcagaatgcattttttagaagggaggaggtactgattctcc 1468  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    |||||||||||||||| | ||| ||||||||||||| || ||||| |  || ||||| || ||||||||||||||| |||||||||||||||||||||||    
T  1469 ttctctggatcacaagctggttctgtactttcttgccacgtttgagaaaatcaatcttccaaagtacatattgcattatatgtgctgggcattacgggaa 1568  T
Q  413 agccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatttgaagaactgtcgagt 510  Q
    |||||||  |  | ||||||||||||||||||||||||||| ||||||||||| || |||||||||||  || | |||||| | ||||||||| ||||    
T  1569 agccagactagtggaagaagacagatcccctttggaaggctactgtctgaaatcttcgttcaaggacagctgttgaagcatctaaagaactgtggagt 1666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 13 - 510
Target Start/End: Original strand, 50234 - 50731
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||||||||| ||||||||||||| |   | ||| |||||| |||| ||||  |   ||||||||||||| |||| ||||||||| ||||||    
T  50234 caaagggaaatcaagaacagaaatgggtctaagacaattcaatggaacagaaataaggtcagcgatgatgggtatggaaattaccatcacagtggaaaca 50333  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    ||||||| |||||||||||||||||||  ||||  |||||| |||||||  |||||| |||| |||||||| ||||||||||| ||||| ||||||||||    
T  50334 attgctagagcatgcagatgctcaaatgatggccagtttcaagtggatgttattaaaggccaatgggagaagaagattaatggtgtcctattcaaaggaa 50433  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    |||| |||||||||||||  || ||||||||||||||||||||||| || |||||| ||||| ||||||| |||||||||||||||| ||||||||||||    
T  50434 atgtaaaagcaaaatcttgtgacttgtctccaattcacaggatgctgaataagatcgtatcagaatgcatttttcagaagggaggagctactgattctcc 50533  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    |||||||||||||||  | ||| ||| ||| ||||| || ||||| |  || ||||| || ||||||||||| |||||||||||||||||||||||| ||    
T  50534 ttctctggatcacaatctggttctgttcttccttgccacgtttgagaaaatcaatcttccaaagtacatattacatcatatgtgctgggcattacggtaa 50633  T
Q  413 agccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatttgaagaactgtcgagt 510  Q
    |||||||  |  | ||||||||| ||||||||||||||||||||||||||||| || |||||||||||  || | |||||| ||||||||||| ||||    
T  50634 agccagactagtggaagaagacatatcccctttggaaggcttctgtctgaaatcttcgttcaaggacagctgttgaagcatctgaagaactgtggagt 50731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0297 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold0297
Description:

Target: scaffold0297; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 477
Target Start/End: Complemental strand, 20520 - 20058
Alignment:
Q  14 aaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaa 113  Q
    ||||| |||||||| |  ||||||||||| ||| ||| || |||||||||||| |||| || |||||||||||||||  ||| ||| ||  |||||| ||    
T  20520 aaaggaaaatcaaggatagaaatgggtctcaaaccgttcagaggaacataaattaggtctgctgtgatgggtatggaagttaccatgactctagaaaaaa 20421  T
Q  114 ttgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaa 213  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||||||||  | ||||||||||||||| ||||||||| ||||||| ||||||| |||||    
T  20420 ttgctaaagcatgcagatgctccaattctggcttgttt-aggtggatgctgtaaaaagccagtgggaggacaagattactggagtcttgttcaatggaaa 20322  T
Q  214 tgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcct 313  Q
    || |||||||||| | ||| |  || || |||||||||||||||||  |||| |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  20321 tgctaaagcaaaaacatcaaaaatgacttcaattcacaggatgcttctgaaggtcttatcataatgcatttttcagaagggaggaggtactgattatcct 20222  T
Q  314 tctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaa 413  Q
    |||||||||||||||||||| |||||||  |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||  || ||||||    
T  20221 tctctggatcacaaggtagtattgtactgccttgcttcctttgagaggataaatctaccaaagtacatattgcatcatatgtgctgggctgtaagggaaa 20122  T
Q  414 gccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagg 477  Q
     ||||||||| | |||||| ||||||||   || |||||| || |||||||| |||||||||||    
T  20121 tccagaagaatggaagaaggcagatcccacatgtaaggctcctttctgaaatctttgttcaagg 20058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 505
Target Start/End: Original strand, 21509 - 22002
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||| || || ||||||||||| ||| | | |||||| ||  |  | |||| || |||||||||||||||  ||| |||||| |||||||||    
T  21509 caaagggaaatcgaggactgaaatgggtctcaaaccattcaaaggtactgagttaaggtctgctgtgatgggtatggaccttaccatcactgtagaaaca 21608  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||||||||||  ||||| ||||||||||| |||| |||| ||||||| ||||||| ||||    
T  21609 attgctaaagcatgcggatgctccaattctggcttgtttcaggtggatgctgttaaaggccagtgggaggacaaaattactggagtcttgttcaatggaa 21708  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    ||| |||| ||||| | || ||  ||||| | |||||||||||||||  |||| | |||||| ||||||| ||||||||||||||||||||||||| |||    
T  21709 atgctaaaacaaaaacatctgaaatgtcttcgattcacaggatgcttctgaaggttttatcagaatgcatttttcagaagggaggaggtactgattatcc 21808  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    ||||||||||||||||||||| || ||||  |||||| |||||||  ||||||||||||| |||||||||||||||||||||||||||||  || |||||    
T  21809 ttctctggatcacaaggtagtattatactgccttgcttcctttgagtggataaatctaccaaagtacatattgcatcatatgtgctgggctataagggaa 21908  T
Q  413 agccagaagaaagaaag-aagacagatcccctttggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatttgaagaactgt 505  Q
    ||||||| ||| |  || ||| ||||| || |||||||| || |||||||| |||||||||||||||   ||||| || ||| |||||||||||    
T  21909 agccagaggaatgggagaaaggcagattccttttggaagactcctgtctgagatttttgttcaaggaaggttgctgaatcatctgaagaactgt 22002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 505
Target Start/End: Original strand, 34710 - 35203
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||| || || ||||||||||| ||| | | |||||| ||  | ||  ||| || |||||||||||||||  ||| |||||| |||||||||    
T  34710 caaagggaaatcgaggactgaaatgggtctcaaaccattcaaaggtactaagatatggtctgctgtgatgggtatggaccttaccatcactgtagaaaca 34809  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||||||||||  ||||| ||||||||||| |||| |||| ||||||| ||||||| ||||    
T  34810 attgctaaagcatgcggatgctccaattctggcttgtttcaggtggatgctgttaaaggccagtgggaggacaaaattactggagtcttgttcaatggaa 34909  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    ||| |||| ||||| | || ||  ||||| | |||||||||||||||  |||| | |||||| ||||||| ||||||||||||||||||||||||| |||    
T  34910 atgctaaaacaaaaacatctgaaatgtcttcgattcacaggatgcttctgaaggttttatcagaatgcatttttcagaagggaggaggtactgattatcc 35009  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    ||||||||||||||||||||| || ||||  |||||| |||||||  ||||||||||||| |||||||||||||||||||||||||||||  || |||||    
T  35010 ttctctggatcacaaggtagtattatactgccttgcttcctttgagtggataaatctaccaaagtacatattgcatcatatgtgctgggctataagggaa 35109  T
Q  413 agccagaagaaagaaag-aagacagatcccctttggaaggcttctgtctgaaatttttgttcaaggacaattgctaaagcatttgaagaactgt 505  Q
    ||||||| ||| |  || ||| ||||| || |||||||| || |||||||| |||||||||||||||   ||||| || ||| |||||||||||    
T  35110 agccagaggaatgggagaaaggcagattccttttggaagactcctgtctgagatttttgttcaaggaaggttgctgaatcatctgaagaactgt 35203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 13 - 478
Target Start/End: Original strand, 6876 - 7341
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||| || || ||||||||||| ||| | |  | ||||||  |||| |||| ||  ||||||||||||||||| | |||||| | |||||||    
T  6876 caaagggaaatcgaggactgaaatgggtcttaaaccattaagaggaactgaaattaggtctgaagtgatgggtatggagatcaccatcactgaagaaaca 6975  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    ||||||||||||||||||||||||||  || |  | ||||||  ||||||  ||||||||||||||||| ||||||||| ||||||| ||||||| ||||    
T  6976 attgctaaagcatgcagatgctcaaactctaggctatttcagaaggatgctgttaaaagccagtgggaggacaagattactggagtcttgttcaatggaa 7075  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    ||| |||||| ||| | ||| |  ||||| |||||||||||||||||  |||| | |||||||||||||| |||| ||||||||||||| || ||| ||     
T  7076 atgctaaagctaaaacatcataaatgtcttcaattcacaggatgcttctgaaggttttatcataatgcatttttctgaagggaggaggttctcattatct 7175  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    |||||| |||||||||||||| |||||||  |||||| ||||||| | ||||||||| || |||||||||||||||||||||||||||||  || |||||    
T  7176 ttctctagatcacaaggtagtattgtactgccttgcttcctttgagaagataaatctgccaaagtacatattgcatcatatgtgctgggctgtaagggaa 7275  T
Q  413 agccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagga 478  Q
    ||||||||||| | ||||||||||||||||| ||||||||| || | |||||| ||||||||||||    
T  7276 agccagaagaatggaagaagacagatcccctatggaaggctcctttatgaaatctttgttcaagga 7341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 161963 - 162154
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  161963 caaagggaaatcaagaacggaaatgggtctaaaaccgtgcaaaggaacagaaatcaggtctgttgtgatgggtatggagattatcatcacagtagaaaca 162062  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgtt 204  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  162063 attgctaaagcttgcagatgctcaaatactgacttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgtt 162154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 13 - 474
Target Start/End: Original strand, 6374 - 6835
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||||||||| ||||||||||||| | | | ||| |||| | ||||||| |  |  |||||| ||||||| |||| ||||||||| ||||||    
T  6374 caaagggaaatcaagaacagaaatgggtctaagaccattcaacggaatagaaatcagatcagcagtgatgtgtatggaaattaccatcacagtggaaaca 6473  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    || |||| |||||||| |||||||| |  ||||  |||||| |||||||| |||||| |||| |||||||| |||||||||||||| || ||||||||||    
T  6474 atcgctagagcatgcaaatgctcaattgatggccagtttcaagtggatgctattaaaggccaatgggagaagaagattaatggagttctattcaaaggaa 6573  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    ||   |||||||||||||  || |||||||||| ||| |||||||| ||||||||| | | | ||||||||||||| |||||||||||||||||||||||    
T  6574 atccaaaagcaaaatcttttgacttgtctccaactcataggatgctgaagaagatccttttagaatgcatctttcaaaagggaggaggtactgattctcc 6673  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    |||||||||||||||| | ||| ||| ||| ||||| |||| ||| ||  ||||||| |  ||||||||| ||||||||||||||| |||  |  |||||    
T  6674 ttctctggatcacaagctggttctgttcttccttgccacctatgagagagtaaatcttctaaagtacatactgcatcatatgtgctaggctctgagggaa 6773  T
Q  413 agccagaagaa-agaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttca 474  Q
    ||||| |||||  |  ||||||||||| || |||||||||||| ||||||| |||||||||||    
T  6774 agcca-aagaattggtagaagacagattccttttggaaggcttttgtctgagatttttgttca 6835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0547 (Bit Score: 155; Significance: 5e-82; HSPs: 1)
Name: scaffold0547
Description:

Target: scaffold0547; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 14 - 471
Target Start/End: Complemental strand, 4521 - 4064
Alignment:
Q  14 aaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaa 113  Q
    ||||| |||||||||| |||||||||  | ||| ||| ||| || ||  |||| || | || ||||||||| |||||||| | |||||| | |||||| |    
T  4521 aaaggaaaatcaagaatggaaatgggattgaaaccgttcaagggtactgaaataagatctgctgtgatgggaatggagatcaccatcactgcagaaacta 4422  T
Q  114 ttgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaa 213  Q
    |||||| || |||||||||   ||| || || || ||||||||||||||  ||||||||||||||||| ||||||||||||||||||| ||| |||||||    
T  4421 ttgctagagtatgcagatgtgaaaacaccggtttatttcaggtggatgctgttaaaagccagtgggaggacaagattaatggagtcctattccaaggaaa 4322  T
Q  214 tgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcct 313  Q
    || ||| |||||||||||||| ||||||||| |||| ||| | || ||||||||  | ||| ||||||| || |||||||||||||||||||||| ||||    
T  4321 tgctaaggcaaaatcttcagagttgtctccagttcataggcttctgaagaagattctttcagaatgcattttccagaagggaggaggtactgattatcct 4222  T
Q  314 tctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaa 413  Q
    ||| ||||||||||||||||| ||||||  ||||| || ||||| ||||||||||| || ||||||||  | |||||||||||||||||  |  ||||||    
T  4221 tctttggatcacaaggtagttctgtactgccttgcaacatttgaaaggataaatctgccaaagtacatcctacatcatatgtgctgggctatgagggaaa 4122  T
Q  414 gccagaagaaa-gaaagaagacagatcccctttggaaggcttctgtctgaaatttttgt 471  Q
    |||| |||||| | ||| |||||||| || |||||||||||| ||||||| ||||||||    
T  4121 gcca-aagaaatggaaggagacagattccttttggaaggcttttgtctgagatttttgt 4064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 155; Significance: 5e-82; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 13 - 474
Target Start/End: Complemental strand, 62381 - 61920
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||||||||| ||||||||| ||| | | |  || |||||| ||||||| |     ||||||||||||||||||| |||||| || ||||||    
T  62381 caaagggaaatcaagaacagaaatgggtttaagaccatttaatggaacagaaatcagatcaacagtgatgggtatggagattaccatcacggtggaaaca 62282  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    ||||||| |||||||||||||||||||   |||   | ||| |||||||| ||||||  ||| |||||||| ||||||||| |||| |||||||| ||||    
T  62281 attgctagagcatgcagatgctcaaatgaaggccaatatcaagtggatgcaattaaagaccaatgggagaagaagattaatagagttctgttcaatggaa 62182  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    ||   ||||| ||| || | || |||||||||| ||| ||| |||| ||||||||| | ||| |||||||||||||||| ||||| ||||||||||||||    
T  62181 atccaaaagccaaagctgctgacttgtctccaactcataggttgctgaagaagatcgtttcagaatgcatctttcagaaaggaggtggtactgattctcc 62082  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    |||||||||||||||| | ||| ||| ||| ||||| |||| ||| ||||||||||| || |||||||||||||||||||||||||||||  |  |||||    
T  62081 ttctctggatcacaagctggttctgttcttccttgccacctatgaaaggataaatcttccaaagtacatattgcatcatatgtgctgggcgctgagggaa 61982  T
Q  413 agccagaaga-aagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttca 474  Q
    ||||| ||||  | | ||||||||||| || |||||||||||| |||||||||| ||||||||    
T  61981 agcca-aagatgaaatagaagacagattccttttggaaggcttttgtctgaaatctttgttca 61920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 5e-82; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 14 - 471
Target Start/End: Original strand, 16815738 - 16816195
Alignment:
Q  14 aaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaa 113  Q
    ||||| |||||||||| |||||||||  | ||| ||| ||| || ||  |||| || | || ||||||||| |||||||| | |||||| | |||||| |    
T  16815738 aaaggaaaatcaagaatggaaatgggattgaaaccgttcaagggtactgaaataagatctgctgtgatgggaatggagatcaccatcactgcagaaacta 16815837  T
Q  114 ttgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaa 213  Q
    |||||| || |||||||||   ||| || || || ||||||||||||||  ||||||||||||||||| ||||||||||||||||||| ||| |||||||    
T  16815838 ttgctagagtatgcagatgtgaaaacaccggtttatttcaggtggatgctgttaaaagccagtgggaggacaagattaatggagtcctattccaaggaaa 16815937  T
Q  214 tgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcct 313  Q
    || ||| |||||||||||||| ||||||||| |||| ||| | || ||||||||  | ||| ||||||| || |||||||||||||||||||||| ||||    
T  16815938 tgctaaggcaaaatcttcagagttgtctccagttcataggcttctgaagaagattctttcagaatgcattttccagaagggaggaggtactgattatcct 16816037  T
Q  314 tctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaa 413  Q
    ||| ||||||||||||||||| ||||||  ||||| || ||||| ||||||||||| || ||||||||  | |||||||||||||||||  |  ||||||    
T  16816038 tctttggatcacaaggtagttctgtactgccttgcaacatttgaaaggataaatctgccaaagtacatcctacatcatatgtgctgggctatgagggaaa 16816137  T
Q  414 gccagaagaaa-gaaagaagacagatcccctttggaaggcttctgtctgaaatttttgt 471  Q
    |||| |||||| | ||| |||||||| || |||||||||||| ||||||| ||||||||    
T  16816138 gcca-aagaaatggaaggagacagattccttttggaaggcttttgtctgagatttttgt 16816195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 151 - 477
Target Start/End: Complemental strand, 16308875 - 16308549
Alignment:
Q  151 tcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaatgttaaagcaaaatcttcagatttgtctccaattcac 250  Q
    ||||||||||||  ||||||||||||||||  ||||  |||||| |||||||||  |||| |||| ||| | ||||||||||||  | |||||  ||||     
T  16308875 tcaggtggatgctgttaaaagccagtgggaagacaaagttaatgaagtcctgtttcaagggaatgctaagggaaaatcttcagaactatctcctgttcat 16308776  T
Q  251 aggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctccttctctggatcacaaggtagttttgtactttcttgcta 350  Q
    | | | || ||||| ||  | ||  | ||||| || | ||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||  ||||| |    
T  16308775 aaggttctgaagaaaattctttctgagtgcattttccggaagggaggaggtacagattatccatctttggatcacaaggtagttttgtactgccttgcaa 16308676  T
Q  351 cctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaagccagaagaaagaaagaagacagatcccctttggaag 450  Q
    | | | | ||||||||||| || ||||||||  | ||||| |||||||||||  |   ||||||||| ||||| | |||||| ||||| |||||||||||    
T  16308675 cttatcaaaggataaatctgccaaagtacatcctacatcacatgtgctgggctctgaaggaaagccaaaagaatggaagaaggcagattccctttggaag 16308576  T
Q  451 gcttctgtctgaaatttttgttcaagg 477  Q
    ||| || ||||||||||||||||||||    
T  16308575 gctactctctgaaatttttgttcaagg 16308549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 14 - 478
Target Start/End: Original strand, 15203771 - 15204235
Alignment:
Q  14 aaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaa 113  Q
    ||||| ||||||||||| ||||||||| | ||| |||   |||| ||| | || |||| || ||||||||| |||||||| | |||||| | ||| |  |    
T  15203771 aaaggaaaatcaagaacagaaatgggtttgaaaccgtttgaaggtacagagataaggtctgctgtgatgggaatggagatcaccatcactgcagacatca 15203870  T
Q  114 ttgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaa 213  Q
    |||| | || |||||||||   ||| ||||| || | ||||||||||||  ||||||||||||||||  ||||| |||||| |||||||||  |||||||    
T  15203871 ttgcaagagtatgcagatgtgaaaacactggtttatatcaggtggatgctgttaaaagccagtgggaagacaaggttaatgaagtcctgtttcaaggaaa 15203970  T
Q  214 tgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcct 313  Q
     | ||| | ||||||||||||  | || ||  |||| | | | || ||||| ||  | ||| ||||||| ||  |||||||||||||||| || | |||     
T  15203971 cgctaagggaaaatcttcagaactatcacctgttcataaggttctgaagaaaattctttcagaatgcattttctagaagggaggaggtacagactatcca 15204070  T
Q  314 tctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaa 413  Q
    ||  ||||||||||||||||||||||||  ||||| || | | | ||||||| ||| || ||||||||  | ||||| ||||||||||| ||  |||||     
T  15204071 tcattggatcacaaggtagttttgtactgccttgcaacttatcaaaggataattctgccaaagtacatcctacatcacatgtgctgggctttgagggaac 15204170  T
Q  414 gccagaagaaa-gaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagga 478  Q
    |||| |||||| |  ||||| ||||| |||||||||||||| || |||||||||||||||||||||    
T  15204171 gcca-aagaaatggtagaaggcagattccctttggaaggctactttctgaaatttttgttcaagga 15204235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0752 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: scaffold0752
Description:

Target: scaffold0752; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 13 - 474
Target Start/End: Complemental strand, 5813 - 5352
Alignment:
Q  13 caaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaaca 112  Q
    |||||||||||||||||| ||||||||||||| | | | ||| |||||| ||||||| |      ||||||||||||| |||| ||||||||| ||||||    
T  5813 caaagggaaatcaagaacagaaatgggtctaagaccattcaatggaacagaaatcagatcaacaatgatgggtatggaaattaccatcacagtggaaaca 5714  T
Q  113 attgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaa 212  Q
    || ||||  ||||||||||||||||||  ||||  || ||| ||| |||  |||||| |  | |||||||| |||||||||| ||| |||||||| ||||    
T  5713 atcgctagcgcatgcagatgctcaaatgatggccagtatcaagtgaatgatattaaaggttaatgggagaagaagattaatgaagttctgttcaatggaa 5614  T
Q  213 atgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcc 312  Q
    ||   |||||||||||||| || |||||||||| ||| |||||||| ||||||||| | ||| |||||||||||||||||||||||||||||||||||||    
T  5613 atccaaaagcaaaatcttctgacttgtctccaactcataggatgctgaagaagatcctttcagaatgcatctttcagaagggaggaggtactgattctcc 5514  T
Q  313 ttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaa 412  Q
    |||| | ||||||||| | ||| ||| ||| ||||| |||| ||| |   ||||||| || ||||||||| |||||||||||||||||||  |  |||||    
T  5513 ttctttagatcacaagctggttctgttcttccttgccacctatgagaaagtaaatcttccaaagtacatactgcatcatatgtgctgggctctgagggaa 5414  T
Q  413 agccagaagaaaga-aagaagacagatcccctttggaaggcttctgtctgaaatttttgttca 474  Q
    ||||| |||||  |  ||||||||||| || |||||||||||| ||||||| |||||||||||    
T  5413 agcca-aagaactagtagaagacagattccttttggaaggcttttgtctgagatttttgttca 5352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 77 - 474
Target Start/End: Complemental strand, 23787230 - 23786833
Alignment:
Q  77 gtgatgggtatggagattatcatcacagtagaaacaattgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagt 176  Q
    |||||||||||||| |||| ||||||||| |||| ||| |||| |||||||||||||||||||  ||||  || | | |||||||| || ||| |||| |    
T  23787230 gtgatgggtatggaaattaccatcacagtggaaataatcgctagagcatgcagatgctcaaatgatggccagtattaagtggatgcaatcaaaggccaat 23787131  T
Q  177 gggagaacaagattaatggagtcctgttcaaaggaaatgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcata 276  Q
    ||||||| |||||||||||||| |||||||| ||||||   |||||||| |||||  | || ||||||| ||| |||||||| ||||||||| | ||| |    
T  23787130 gggagaagaagattaatggagttctgttcaatggaaatccaaaagcaaagtcttctaacttatctccaactcataggatgctgaagaagatcgtttcaga 23787031  T
Q  277 atgcatctttcagaagggaggaggtactgattctccttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaag 376  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||| ||||| | ||| ||| ||| ||||| |||| ||| || |||||||| || |||    
T  23787030 atgcatctttcagaaaggaggtggtactgattctccttctctggattacaagttggttctgttcttccttgccacctatgagagaataaatcttccaaag 23786931  T
Q  377 tacatattgcatcatatgtgctgggcattacgggaaagccagaagaa-agaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttca 474  Q
    |||||| ||||||||||||||| |||  |  |||||||||| |||||  |  ||||||||||| || |||||||||||| ||||||| |||||||||||    
T  23786930 tacatactgcatcatatgtgctaggctctgagggaaagcca-aagaattggtagaagacagattccttttggaaggcttttgtctgagatttttgttca 23786833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 77 - 474
Target Start/End: Original strand, 22153349 - 22153746
Alignment:
Q  77 gtgatgggtatggagattatcatcacagtagaaacaattgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagt 176  Q
    ||||||||||||||||||| |||||| || ||||| |||||||||||||||||||||||||||   ||   || ||| |||||||| || |||| ||| |    
T  22153349 gtgatgggtatggagattaccatcactgtggaaactattgctaaagcatgcagatgctcaaatgaaggtcagtatcaagtggatgcaatcaaaaaccaat 22153448  T
Q  177 gggagaacaagattaatggagtcctgttcaaaggaaatgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcata 276  Q
    | ||| | |||||||||||||| || ||||| ||||||   ||||| |||||||| || |||||||||| ||| ||| || | ||||||||  | ||| |    
T  22153449 gagaggagaagattaatggagttctattcaatggaaatccaaaagccaaatcttctgacttgtctccaactcatagggtgttgaagaagattgtctcaaa 22153548  T
Q  277 atgcatctttcagaagggaggaggtactgattctccttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaag 376  Q
    ||||||||||||||| ||||| ||||||||| |||||||| ||||||||||| | ||| ||| |||||||||||||| ||| || ||||| || || |||    
T  22153549 atgcatctttcagaaaggaggtggtactgatgctccttctttggatcacaagctggttctgtgctttcttgctacctatgagagaataaaccttcctaag 22153648  T
Q  377 tacatattgcatcatatgtgctgggcattacgggaaagccagaagaa-agaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttca 474  Q
    |||||| ||||||| |||||||||||  || ||||||| || |||||  |  |||||||| || || |||||||| ||| | |||||||| ||||||||    
T  22153649 tacatactgcatcacatgtgctgggctctaagggaaagtca-aagaattggtagaagacaaattccttttggaagacttttatctgaaatctttgttca 22153746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 477
Target Start/End: Complemental strand, 19228663 - 19228200
Alignment:
Q  14 aaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaa 113  Q
    ||||||||||||||||| ||||||||| | ||| |||   |||||||  | || |||| ||  |||||||| |||||||| |  || || | ||| |  |    
T  19228663 aaagggaaatcaagaacagaaatgggtttgaaaccgtttgaaggaactgagataaggtctgccgtgatgggaatggagatcagtattactgcagacatca 19228564  T
Q  114 ttgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaa 213  Q
    |||| | || |||||||||   |||| |||| || | ||||||||| ||  |||| |||||||||||  | ||| | |||| |||||||||| |||||||    
T  19228563 ttgcaagagtatgcagatgtgaaaattctggtttatatcaggtggaagctgttaagagccagtgggaagaaaaggtcaatgaagtcctgttccaaggaaa 19228464  T
Q  214 tgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcct 313  Q
    ||  || | ||||||||||||  | || ||  |||||||| |  | ||||| ||  | ||| ||||||| || || |||||||||||||| ||| ||||     
T  19228463 tgcaaagggaaaatcttcagaactatcacctgttcacagggttttaaagaaaattctgtcagaatgcattttccaaaagggaggaggtacagatgctcca 19228364  T
Q  314 tctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggcattacgggaaa 413  Q
    ||| ||||||||||||||||| ||||||  ||||| || | | | || |||||| | || ||||| ||  | |||||||||||||||||  |   |||||    
T  19228363 tctttggatcacaaggtagttatgtactgccttgcaacttatcaaagaataaatttgccaaagtatatccttcatcatatgtgctgggctctgaaggaaa 19228264  T
Q  414 gccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagg 477  Q
    |||| ||||| | |||||| || || |||||||||||||| || ||||||||||||||||||||    
T  19228263 gccaaaagaacggaagaaggcaaattccctttggaaggctactttctgaaatttttgttcaagg 19228200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0738 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0738
Description:

Target: scaffold0738; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 77 - 402
Target Start/End: Original strand, 1061 - 1386
Alignment:
Q  77 gtgatgggtatggagattatcatcacagtagaaacaattgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagt 176  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||| ||| |||||| |||||   ||   || ||| |||||||| || |||  ||| |    
T  1061 gtgatgggtatggagattaccatcacagtagaaactattgctaaagaatgtagatgcccaaatgaaggtcagtatcaagtggatgcaatcaaagaccaat 1160  T
Q  177 gggagaacaagattaatggagtcctgttcaaaggaaatgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcata 276  Q
    ||||||| |||||||||| ||| || ||||| ||||||   ||||| |||||||| || |||||||||| ||| ||| |||| ||||||||  | ||| |    
T  1161 gggagaagaagattaatgaagttctattcaatggaaatccaaaagccaaatcttctgacttgtctccaactcatagggtgctcaagaagattgtctcaga 1260  T
Q  277 atgcatctttcagaagggaggaggtactgattctccttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaag 376  Q
    |||||||||| |||| ||||| ||||||||| |||||||| ||||||||||| | ||| ||||||| |||||||||| ||| || ||||| || || |||    
T  1261 atgcatcttttagaaaggaggtggtactgatgctccttctttggatcacaagttggttctgtacttccttgctacctatgagagtataaaccttccaaag 1360  T
Q  377 tacatattgcatcatatgtgctgggc 402  Q
    |||||||||||||||| |||||||||    
T  1361 tacatattgcatcataagtgctgggc 1386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 77 - 420
Target Start/End: Complemental strand, 10784 - 10441
Alignment:
Q  77 gtgatgggtatggagattatcatcacagtagaaacaattgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagt 176  Q
    ||||||||||||||||| | ||||||    |||||||| |||| ||||||||||||||||||  ||||||| |||||| | || ||  | || ||||| |    
T  10784 gtgatgggtatggagatcaccatcactcaggaaacaatagctagagcatgcagatgctcaaactctggcttatttcagatagacgctgtcaagagccaat 10685  T
Q  177 gggagaacaagattaatggagtcctgttcaaaggaaatgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcata 276  Q
    ||||   |||||||||||||||| |||||  |||||||   ||||| ||| | ||| |  |||||||||||||||||||||||  ||||    ||||| |    
T  10684 gggaaggcaagattaatggagtcttgttcggaggaaatcccaaagctaaaacatcataaatgtctccaattcacaggatgcttctgaaggcgctatcaga 10585  T
Q  277 atgcatctttcagaagggaggaggtactgattctccttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaag 376  Q
     ||||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||||    |||  ||||||| | ||||||||| || |||    
T  10584 ttgcatttttcagaagggaggaggtactgattatccttctctagatcacaaagtagttctgtactgctatgcgtcctttgaaaagataaatcttccaaag 10485  T
Q  377 tacatattgcatcatatgtgctgggcattacgggaaagccagaa 420  Q
    ||||||||||||||||||||||||||  || |||||||||||||    
T  10484 tacatattgcatcatatgtgctgggctataagggaaagccagaa 10441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 76 - 478
Target Start/End: Complemental strand, 73382 - 72980
Alignment:
Q  76 tgtgatgggtatggagattatcatcacagtagaaacaattgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccag 175  Q
    ||||||||| |||||||| | |||||| | |||||| ||||||| ||||||||||||   ||| || || || | ||||||||| ||  |||||||||||    
T  73382 tgtgatgggaatggagatcaccatcactgcagaaactattgctagagcatgcagatgtgaaaacaccggtttatatcaggtggaagctgttaaaagccag 73283  T
Q  176 tgggagaacaagattaatggagtcctgttcaaaggaaatgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcat 275  Q
    |||||  ||||| |||||| |||| |||   ||||||||||||| |||||||||||| |  |||||||  |||| ||| | || ||||| ||  | | |     
T  73282 tgggaagacaaggttaatgaagtcttgtatcaaggaaatgttaaggcaaaatcttcaaaactgtctcctgttcataggcttctgaagaaaattcttttag 73183  T
Q  276 aatgcatctttcagaagggaggaggtactgattctccttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaa 375  Q
    ||||||| || |||||||||||||||| ||||  ||||||| ||||||||||||||||| |||| |  ||||| || ||| | ||||||||||| || ||    
T  73182 aatgcattttccagaagggaggaggtattgatagtccttctttggatcacaaggtagttatgtattaccttgcaacatttcaaaggataaatctgccaaa 73083  T
Q  376 gtacatattgcatcatatgtgctgggcattacgggaaagccagaagaaa-gaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttca 474  Q
    ||||||  | | |||||||||||||||  |  |||||||||| |||||| | ||| |||||||| ||||||||||| ||| | || || |||||||||||    
T  73082 gtacatcctacgtcatatgtgctgggctctgagggaaagcca-aagaaatggaaggagacagattccctttggaagacttttatccgagatttttgttca 72984  T
Q  475 agga 478  Q
    ||||    
T  72983 agga 72980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 83 - 478
Target Start/End: Complemental strand, 10916 - 10521
Alignment:
Q  83 ggtatggagattatcatcacagtagaaacaattgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggaga 182  Q
    |||||||| |||| |||||| | |||| ||||||||||||||||| ||||||| ||  ||||||||||||||  |||||   |||||||||| ||||||     
T  10916 ggtatggaaattaccatcactgaagaagcaattgctaaagcatgcggatgctccaactctggcttgtttcagtgggatgttgttaaaagccaatgggagg 10817  T
Q  183 acaagattaatggagtcctgttcaaaggaaatgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcat 282  Q
    ||||||| ||||||||| || |||| ||||| |  ||||||||  |  | ||  ||||| |||| || || |||  |  |||||| |||||| |||||||    
T  10816 acaagataaatggagtcttggtcaatggaaaagccaaagcaaagacaacggaaatgtcttcaatccatagaatgtatctgaagattttatcagaatgcat 10717  T
Q  283 ctttcagaagggaggaggtactgattctcct-tctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacat 381  Q
     ||||| || || ||||||| |||| | ||| ||||||||||| |||||||| ||||| | ||| ||| ||||||| |  || |||||||| ||||||||    
T  10716 atttcaaaaaggtggaggtattgat-cacctctctctggatcataaggtagtattgtattgtctcgcttcctttgagaaaatcaatctacctaagtacat 10618  T
Q  382 attgcatcatatgtgctgggcattacgggaaagccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagga 478  Q
    |||  || |||||||||||||  || ||||| |||||||||| || ||||| ||||| |||| |||||| ||  |||||| ||||||||||||||||    
T  10617 attatattatatgtgctgggctataagggaaggccagaagaatgagagaaggcagattccctatggaagactcttgtctgtaatttttgttcaagga 10521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 77 - 328
Target Start/End: Original strand, 55774 - 56025
Alignment:
Q  77 gtgatgggtatggagattatcatcacagtagaaacaattgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagt 176  Q
    |||||||||||||| |||| |||||  || ||||| ||| |||||||||||| |||||| | |  ||||  || |||||| ||||| || ||| |||| |    
T  55774 gtgatgggtatggaaattaccatcatggtggaaactatttctaaagcatgcaaatgctccattgatggccagtatcaggtcgatgcaatcaaaggccaat 55873  T
Q  177 gggagaacaagattaatggagtcctgttcaaaggaaatgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcata 276  Q
     || ||| |||||||||||||| ||||||||  |||||   ||||| |||||| | || || ||||||| ||| ||| |||| ||||||||  | ||| |    
T  55874 cggggaagaagattaatggagttctgttcaatagaaattcaaaagccaaatctgctgacttatctccaactcataggttgctgaagaagattgtctcaga 55973  T
Q  277 atgcatctttcagaagggaggaggtactgattctccttctctggatcacaag 328  Q
    |||||||||||| || ||||| |||||| ||||||||||||| |||||||||    
T  55974 atgcatctttcataaaggaggtggtactcattctccttctctagatcacaag 56025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1638 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold1638
Description:

Target: scaffold1638; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 290 - 477
Target Start/End: Complemental strand, 1435 - 1248
Alignment:
Q  290 aagggaggaggtactgattctccttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatc 389  Q
    |||||||||||||| ||| |||| ||| ||||||||||||||||| ||||||  ||||| || | | | || |||||| | || ||||| ||  | ||||    
T  1435 aagggaggaggtacagatgctccatctttggatcacaaggtagttatgtactgccttgcaacttatcaaagaataaatttgccaaagtatatccttcatc 1336  T
Q  390 atatgtgctgggcattacgggaaagccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagg 477  Q
    |||||||||||||  |   ||||||||| ||||| | |||||| || || |||||||||||||| || ||||||||||||||||||||    
T  1335 atatgtgctgggctctgaaggaaagccaaaagaacggaagaaggcaaattccctttggaaggctactttctgaaatttttgttcaagg 1248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0739 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0739
Description:

Target: scaffold0739; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 402
Target Start/End: Complemental strand, 5884 - 5499
Alignment:
Q  14 aaagggaaatcaagaacggaaatgggtctaaaatcgtgcaaaggaacataaatcaggtatgttgtgatgggtatggagattatcatcacagtagaaacaa 113  Q
    ||||| ||||| ||||||||||||||| | | | ||| ||| || ||  |||| |||| || ||| ||||| |||||||| | |||||  | |||||| |    
T  5884 aaaggaaaatctagaacggaaatgggtttgagaccgttcaatggtactgaaataaggtctgctgtaatgggaatggagatcaccatcaatgcagaaacta 5785  T
Q  114 ttgctaaagcatgcagatgctcaaatactggcttgtttcaggtggatgccattaaaagccagtgggagaacaagattaatggagtcctgttcaaaggaaa 213  Q
    ||||||||| ||||||||||  ||| ||||| || | ||| |||||||   ||||| ||||||||||  | ||  |||||| ||| ||||   |||||||    
T  5784 ttgctaaagtatgcagatgcgaaaacactggtttatatcaagtggatg---ttaaaggccagtgggaagaaaacgttaatgaagttctgtatcaaggaaa 5688  T
Q  214 tgttaaagcaaaatcttcagatttgtctccaattcacaggatgcttaagaagatcttatcataatgcatctttcagaagggaggaggtactgattctcct 313  Q
    ||  || | |||||||||||| ||||| ||  |||| | | | || ||||| || || ||| ||||||| || |||||||||||||||| | ||| ||||    
T  5687 tgcgaagggaaaatcttcagagttgtcacctgttcataagcttctgaagaaaattttttcagaatgcattttccagaagggaggaggtattaattatcct 5588  T
Q  314 tctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaagtacatattgcatcatatgtgctgggc 402  Q
    ||| || |||||||||| ||| |||| |  ||||  || ||| | ||||||||||| || ||||||||  | ||||| |||||||||||    
T  5587 tctttgaatcacaaggttgttctgtattaccttggaacttttcaaaggataaatctgccaaagtacatcctacatcacatgtgctgggc 5499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 276 - 477
Target Start/End: Original strand, 1016 - 1217
Alignment:
Q  276 aatgcatctttcagaagggaggaggtactgattctccttctctggatcacaaggtagttttgtactttcttgctacctttgataggataaatctaccgaa 375  Q
    ||||||| || || ||||||||||||||  ||  ||| ||| ||||||||||||||||| ||||||  ||||| || | | | || |||||| | || ||    
T  1016 aatgcattttccaaaagggaggaggtacaaataatccatctttggatcacaaggtagttatgtactgccttgcaacttatcaaagaataaatttgccaaa 1115  T
Q  376 gtacatattgcatcatatgtgctgggcattacgggaaagccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaa 475  Q
    ||| ||  | |||||||||||||||||  |   ||||||||| ||||| | |||||| || || |||||||||||||| || ||||||||||||||||||    
T  1116 gtatatccttcatcatatgtgctgggctctgaaggaaagccaaaagaacggaagaaggcaaattccctttggaaggctactttctgaaatttttgttcaa 1215  T
Q  476 gg 477  Q
    ||    
T  1216 gg 1217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0474 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 477
Target Start/End: Original strand, 2350 - 2441
Alignment:
Q  386 catcatatgtgctgggcattacgggaaagccagaagaaagaaagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagg 477  Q
    |||||||||||||||||  |   ||||||||| ||||| | |||||| || || |||||||||||||| || ||||||||||||||||||||    
T  2350 catcatatgtgctgggctctgaaggaaagccaaaagaacggaagaaggcaaattccctttggaaggctactttctgaaatttttgttcaagg 2441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 195411 - 195361
Alignment:
Q  427 aagaagacagatcccctttggaaggcttctgtctgaaatttttgttcaagg 477  Q
    |||||| ||||| | |||||||||||| || ||||||||||||||||||||    
T  195411 aagaaggcagattctctttggaaggctactctctgaaatttttgttcaagg 195361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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