View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17853_low_6 (Length: 444)
Name: NF17853_low_6
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17853_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 56 - 432
Target Start/End: Original strand, 25740921 - 25741297
Alignment:
| Q |
56 |
atacacggcagagtaagtaagtaacatggtgaccttgttgtcacgatccactaagattcatccattgttggttcagttcgtcctttatnnnnnnncgcac |
155 |
Q |
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| T |
25740921 |
atactcggcagagtatgcaagtgacagagtgaccttgttgtcacgatccactaagattcatccgttgttggttcagttcgtcctttataaaaaaacgcac |
25741020 |
T |
|
| Q |
156 |
gaggaaatattgaatatacataattactctttctgattgtttctgcagattggttggagttgccgggtgctttgatacttttgatcgttgtatctcctga |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
25741021 |
gaggaaatattgaatatacataattactctttctgattgtttctgcagattggttggagttgccgggtgctttgatactcttgattgttgtatctcctga |
25741120 |
T |
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| Q |
256 |
tctagttgcaagcacctttagaaacgacctagttggaataatcgtgtgccttgtcattgcatgttatttgctacaagagcatattcgtgcatctggtggt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741121 |
tctagttgcaagcacctttagaaacgacctagttggaataatcgtgtgccttgtcattgcatgttatttgctacaagagcatattcgtgcatctggtggt |
25741220 |
T |
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| Q |
356 |
ttcagaaactccttcactaaagcaaatggcgtatcaaattccgttggcataattcttctgttagtctaccccgtctg |
432 |
Q |
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| T |
25741221 |
ttcagaaactccttcactaaagcaaatggcgtatcaaattccgttggcataattcttctattagtctaccccgtctg |
25741297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 189 - 432
Target Start/End: Original strand, 25744588 - 25744831
Alignment:
| Q |
189 |
tgattgtttctgcagattggttggagttgccgggtgctttgatacttttgatcgttgtatctcctgatctagttgcaagcacctttagaaacgacctagt |
288 |
Q |
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| T |
25744588 |
tgattgtttctgcagattggttggagttgccgggtgctttgatacttttgattgttgtatctcctgatctagttgcaagcacctttagaaacgaccttgt |
25744687 |
T |
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| Q |
289 |
tggaataatcgtgtgccttgtcattgcatgttatttgctacaagagcatattcgtgcatctggtggtttcagaaactccttcactaaagcaaatggcgta |
388 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25744688 |
tggagtaattgtgtgccttgtcattgcatgttatttgctacaagagcatattcgtgcatctggtggtttcagaaactccttcactagagcaaatggcgta |
25744787 |
T |
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| Q |
389 |
tcaaattccgttggcataattcttctgttagtctaccccgtctg |
432 |
Q |
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| T |
25744788 |
tcaaattccattggcataattcttctgttagtctaccccatctg |
25744831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 25740811 - 25740922
Alignment:
| Q |
1 |
ttctcacattcgtgttaggcagtcctatatgctagtatgtactaaaactaagtatatacacggcagagtaagtaagtaacatggtgaccttgttgtcacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
25740811 |
ttctcacattcgtgttaggcagtcctatatgctagtatgtactaaaactaagcatatacacagcagagtaagtaagtaacacggtgaccttgttgtcacg |
25740910 |
T |
|
| Q |
101 |
atccactaagat |
112 |
Q |
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||||||| |||| |
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| T |
25740911 |
atccacttagat |
25740922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 417
Target Start/End: Original strand, 12514625 - 12514819
Alignment:
| Q |
223 |
tgctttgatacttttgatcgttgtatctcctgatctagttgcaagcacctttagaaacgacctagttggaataatcgtgtgccttgtcattgcatgttat |
322 |
Q |
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||||||||| ||| | || ||||| |||| |||||| |||||| ||||||||||| ||| |||||| | | || ||||||||||||||||||||| |
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| T |
12514625 |
tgctttgattcttcttattgttgttgctcccgatctatttgcaaacacctttagaagcgatgaagttggcttggtagtatgccttgtcattgcatgttat |
12514724 |
T |
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| Q |
323 |
ttgctacaagagcatattcgtgcatctggtggtttcagaaactccttcactaaagcaaatggcgtatcaaattccgttggcataattcttctgtt |
417 |
Q |
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| T |
12514725 |
ttgctacaagaacaaattcgggcatctggtggttttagagattctttaacaaaagctcatggaatatcaaatacaattggcataattcttctgtt |
12514819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 432
Target Start/End: Original strand, 12510825 - 12510955
Alignment:
| Q |
302 |
tgccttgtcattgcatgttatttgctacaagagcatattcgtgcatctggtggtttcagaaactccttcactaaagcaaatggcgtatcaaattccgttg |
401 |
Q |
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|||||| ||||||||||||||||||| ||||| |||||||| ||||| ||||| || ||| | || ||||| ||||| ||||| | |||||| | ||| |
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| T |
12510825 |
tgccttatcattgcatgttatttgctgcaagaacatattcgggcatccggtggctttagagattcattcacaaaagcttatggcatgtcaaatacaattg |
12510924 |
T |
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| Q |
402 |
gcataattcttctgttagtctaccccgtctg |
432 |
Q |
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|||||||||||||| || |||||||| |||| |
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| T |
12510925 |
gcataattcttctgctaatctaccccatctg |
12510955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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