View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17853_low_7 (Length: 443)
Name: NF17853_low_7
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17853_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 6 - 424
Target Start/End: Complemental strand, 53425107 - 53424688
Alignment:
| Q |
6 |
aggagcagagagaaatacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggt |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53425107 |
aggatcagagagaaatacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggt |
53425008 |
T |
|
| Q |
106 |
agtaacaaagttatcaaggtacaatctatagcgctctgcggtatatcaannnnnnnnnnnnnnnnnnnnnnnnncaatgatatatttctcatgtttgata |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53425007 |
agtaacaaagttatcaaggtacaatctatagcgctctgcggtatatcaatttattttttaatttttttaattttcaatgatatatttctcatgtttgata |
53424908 |
T |
|
| Q |
206 |
attgttattgttaagggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaagacaactactgcag |
305 |
Q |
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| T |
53424907 |
attgttattgttaagggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaagacaactactgcag |
53424808 |
T |
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| Q |
306 |
atttagctgaagcaaggtacgtaagcatgcataaccataacaataaattaacttaaacttgtttgctgggcataattaatc-nnnnnnnttattattgtt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
53424807 |
atttagctgaagcaaggtacgtaagcatgcataaccataacaattaattaacttaaacttgtttgttgggcataattaatcaaaaaaaattattattgtt |
53424708 |
T |
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| Q |
405 |
tgttaaatgcaggatgtgtc |
424 |
Q |
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|||||||||||||||||||| |
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| T |
53424707 |
tgttaaatgcaggatgtgtc |
53424688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 325
Target Start/End: Original strand, 48373647 - 48373753
Alignment:
| Q |
219 |
agggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaagacaactactgcagatttagctgaagc |
318 |
Q |
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|||||||||||||||||||| ||||||||||||||||| || |||||||| || |||| || || ||| |||||||||||||| || ||| ||||||| |
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| T |
48373647 |
agggtcaagccataaatttctcccctctttcaaaatctgccgattatccattgataactggaaagtctgctaagacaactactgctgacttaactgaagc |
48373746 |
T |
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| Q |
319 |
aaggtac |
325 |
Q |
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||||||| |
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| T |
48373747 |
aaggtac |
48373753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 48372459 - 48372558
Alignment:
| Q |
29 |
ttaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatcaaggtaca |
128 |
Q |
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| T |
48372459 |
ttaatgatgcaccttggatattaacggttgctgccaccactattgaccgtgactttcagtccaatgttgtcttgggtaataacaaagttgtcaaggtaca |
48372558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 26097609 - 26097502
Alignment:
| Q |
21 |
tacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatc |
120 |
Q |
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||||||| ||||||| ||||||||||| | || ||||| ||||| || || |||||||| ||||||||||| |||| ||||||| |||||||||| || |
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| T |
26097609 |
tacagttgttaatgacgctccttggatactaacggttgctgccactaccattgatcgtgactttcagtccaatgttgtcttgggtaataacaaagttgtc |
26097510 |
T |
|
| Q |
121 |
aaggtaca |
128 |
Q |
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|||||||| |
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| T |
26097509 |
aaggtaca |
26097502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 53309082 - 53308963
Alignment:
| Q |
21 |
tacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatc |
120 |
Q |
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||||||| ||||||| ||||||||||| || ||||||| |||||| || |||||| ||||| | |||||||| ||||||| |||||| ||||||||| |
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| T |
53309082 |
tacagttgttaatgacgctccttggatattaactgttgtagccactaccatcgattgtgatatgcagtccaacgttgttttaggtagtggcaaagttatt |
53308983 |
T |
|
| Q |
121 |
aaggtacaatctatagcgct |
140 |
Q |
| |
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||||||||| |||| |||| |
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| T |
53308982 |
gaggtacaatttataacgct |
53308963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 53432241 - 53432124
Alignment:
| Q |
13 |
gagagaaatacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaaca |
112 |
Q |
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||||||| |||| ||| |||||||||||||||||| || || |||| ||||| ||||| || ||||| |||||||||| |||| ||||||| ||| |
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| T |
53432241 |
gagagaagtacacttactaatgatgctccttggatattaaccgttggtgccacaactattgaccgtgaatttcagtccaacgttgtcttgggtaataaag |
53432142 |
T |
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| Q |
113 |
aagttatcaaggtacaat |
130 |
Q |
| |
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|||||||||||||||||| |
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| T |
53432141 |
aagttatcaaggtacaat |
53432124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 53320858 - 53320744
Alignment:
| Q |
21 |
tacagttattaatgatgctccttggatgttgactgttgcagccaccactatcgatcgtgatcttcagtccaatattgttttgggtagtaacaaagttatc |
120 |
Q |
| |
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||||||| |||||||||||| ||||| || || |||| |||||| || || || |||||||| ||||| ||| |||| ||||||| | |||||| ||| |
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| T |
53320858 |
tacagtttctaatgatgctccctggatattaaccgttggagccacaacaattgaccgtgatctccagtctaatgttgtcttgggtaatggcaaagtgatc |
53320759 |
T |
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| Q |
121 |
aaggtacaatctata |
135 |
Q |
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||||||||| ||||| |
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| T |
53320758 |
aaggtacaaactata |
53320744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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