View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17853_low_8 (Length: 422)
Name: NF17853_low_8
Description: NF17853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17853_low_8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 219 - 422
Target Start/End: Complemental strand, 8160369 - 8160166
Alignment:
| Q |
219 |
gaacactcttttaggcagaattcgacaattgattcgcaatattgtgtgacactgttccttttctgtagactcgattattattgataaggtagttgcgttt |
318 |
Q |
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| T |
8160369 |
gaacacttttttaggcaaaattcggctattgaatcacaatattgtgtgatactattccttttctgtagactcgattattattgataaggtagttgtgttt |
8160270 |
T |
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| Q |
319 |
tttcctcttaaatgagtttatccaattagttacgtatatgatctgtataatttgacttttcaatactcacgttcttggacacaaatttgcaagagttaaa |
418 |
Q |
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| T |
8160269 |
tttcctcttaaatgagtttatccaattagttacgtatatgatctgtataatttgactttttaatactcacgttcttggacacaaatttgtaagagttgaa |
8160170 |
T |
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| Q |
419 |
ttac |
422 |
Q |
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|||| |
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| T |
8160169 |
ttac |
8160166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 8160606 - 8160547
Alignment:
| Q |
163 |
aaatctaatgtgagacggatggagtatcatcaagagagctctatctttcttagtgtgaac |
222 |
Q |
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| T |
8160606 |
aaatctaatgtgagacggaaggagtatcgtcaaggaagctctatctttctaagtgtgaac |
8160547 |
T |
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