View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17854_high_3 (Length: 504)
Name: NF17854_high_3
Description: NF17854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17854_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 487
Target Start/End: Original strand, 7225926 - 7226429
Alignment:
| Q |
20 |
atatacactaatggatgccatacatgtgagtaacaaaagttggaaaaattatgaggtaaattagtcaacaacaaacaacaaaagtggagagttgggtgag |
119 |
Q |
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| T |
7225926 |
atatacactaatggatgccatacatgtgagtaacaaaagttggaaaagttatgaggtaaattagtcaacaacaaacaacaaaagtggagagttgggtgag |
7226025 |
T |
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| Q |
120 |
actgtgtttcttcttttgtcagtttctgaaactggaagcaatgatattgtcccnnnnnnnnagcatatatttatgactttaannnnnnn-gaatcttaga |
218 |
Q |
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| T |
7226026 |
actgtgtttcttcttttgtcagtttctgaaactggaagcaatgatattgtcccttttttttagcatatatttatgactttaattttctttgaatcttaga |
7226125 |
T |
|
| Q |
219 |
tatgtcattcagcagccagagattttgtcttcctt----------------------tatttgtttcactgtttcccataagaaggaaatatgcatgtag |
296 |
Q |
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| T |
7226126 |
tatgtcattcagcagccagagattttgtcttccttagtttggaatttgttttttttttatttgtttcactgtttcccataagaaggaaatatgcatgtag |
7226225 |
T |
|
| Q |
297 |
aaaaactttg-------------acggcagacacttaatttccgagcacattttatacgatttcaaagtttctctagttaaataaacgcacatgtatatg |
383 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7226226 |
aaaaactttgacatttgaatttgacggcagacacttaatttccgagcacattttatacgatttcaaagtttctctagttaaataaacgcacatgtatatt |
7226325 |
T |
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| Q |
384 |
ttgcataaaacttcagaaagcattatacatatttttcataatgttgttttctactaaccatgtctctaaatatatgacctattgcctcaaaacaaaaata |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7226326 |
ttgcataaaacttcagaaagcattatacatatttttcataatgttgttttctactaaccatgtctctaaatatatgacctattgcctcaaaacaaaaata |
7226425 |
T |
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| Q |
484 |
tatg |
487 |
Q |
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|||| |
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| T |
7226426 |
tatg |
7226429 |
T |
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