View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17854_high_6 (Length: 397)
Name: NF17854_high_6
Description: NF17854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17854_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 16749743 - 16749516
Alignment:
| Q |
19 |
tttcaacttatcaaactaagttatgatcatctacccttttatctgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaaga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
16749743 |
tttcaacttatcaaactaagttatgatcatctacccttttatctgaaaaagtgctttgcattttgctctttgtttccaaaagactatcgaattgagaaga |
16749644 |
T |
|
| Q |
119 |
aaaagttgattcgactttggattgcacaaggtcttgttcattcatccgatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttact |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
16749643 |
aaaagttgattcgactttggattgcacaaggtctcgttcattcatccgatgaaagtacaaatttagaagataatggtgataagtacttcttgactttact |
16749544 |
T |
|
| Q |
219 |
tcatagatctttctttcaagatatagtc |
246 |
Q |
| |
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|||||||||| ||||||||| ||||||| |
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|
| T |
16749543 |
tcatagatctatctttcaaggtatagtc |
16749516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 16749498 - 16749414
Alignment:
| Q |
297 |
ctgatctgtctagattcatttctggaaataattatgtcatagtaaatgaaaaggagcagcatattgaaaagggaacccatcatgt |
381 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16749498 |
ctgatctgtctagattcatttctggaaataattatgtcatagtaaatgaaaaggagcagcatattgaaaagggaacccgtcatgt |
16749414 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 7495078 - 7495295
Alignment:
| Q |
25 |
cttatcaaactaagttatgatcatctacccttttatctgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagt |
124 |
Q |
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| T |
7495078 |
cttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgctttgctttttgttcattgtttccaaaagactatttaattgataaaacaaaat |
7495177 |
T |
|
| Q |
125 |
tgattcgactttggattgcacaaggtcttgttcattcatccgatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatag |
224 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||| | ||||||||||||||||||| |||| |||||| |
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| T |
7495178 |
tgattcgactttggattgcacaagggtttgttcagtcatctgatgaaagtacaagtttagaagatattggtgataagtacttcatggatttagttcataa |
7495277 |
T |
|
| Q |
225 |
atctttctttcaagatat |
242 |
Q |
| |
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||||||||||||| |||| |
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| T |
7495278 |
atctttctttcaaaatat |
7495295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 7721733 - 7721517
Alignment:
| Q |
25 |
cttatcaaactaagttatgatcatctacccttttatctgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| || |||||||||| ||||| | ||| ||||||||||||||||||||| |||| || || | | |
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|
| T |
7721733 |
cttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgctttgctttttgttctttgtttccaaaagactatttaattccaaaacaaca-t |
7721635 |
T |
|
| Q |
125 |
tgattcgactttggattgcacaaggtcttgttcattcatccgatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttcatag |
224 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||| | ||||||||||||||||||| |||| |||||| |
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| T |
7721634 |
tgattcgactttggattgcacaagggtttgttcagtcatcagatgaaagtacaagtttagaagatattggtgataagtacttcatggatttagttcataa |
7721535 |
T |
|
| Q |
225 |
atctttctttcaagatat |
242 |
Q |
| |
|
||||||||||||| |||| |
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|
| T |
7721534 |
atctttctttcaaaatat |
7721517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 7520745 - 7520965
Alignment:
| Q |
25 |
cttatcaaactaagttatgatcatctacccttttatctgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| || |||||||||| ||||| | ||| || |||||||||||||||||| ||| | || | || | |
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| T |
7520745 |
cttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgctttgctttttgttcattgtttccaaaagactatttcattcataaaacaacat |
7520844 |
T |
|
| Q |
125 |
tgattcgactttggattgcacaaggtcttgttcattcatcc---gatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttca |
221 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||| | ||||||||||||||||||| |||| |||| |
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| T |
7520845 |
tgattcgactttggattgcacaagggtttgttcagtcatcatcagatgaaagtacaagtttagaagatattggtgataagtacttcatggatttagttca |
7520944 |
T |
|
| Q |
222 |
tagatctttctttcaagatat |
242 |
Q |
| |
|
|| ||||||||||||| |||| |
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| T |
7520945 |
taaatctttctttcaaaatat |
7520965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 7482673 - 7482899
Alignment:
| Q |
19 |
tttcaacttatcaaactaagttatgatcatctacccttttatctgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaaga |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||| || |||||||||| ||||| | ||| || |||||||||||||||| | |||| || | |
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| T |
7482673 |
tttcagcttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgctttgctttttgttcattgtttccaaaagactttttaatttgtaaaa |
7482772 |
T |
|
| Q |
119 |
aaaagttgattcgactttggattgcacaaggtcttgttcattcatcc---gatgaaagtacaaatttagaagacaatggtgataagtacttcatgacttt |
215 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||| | ||||||||||||||||||| ||| |
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| T |
7482773 |
taacattgattcgactttggattgcacaagggtttgttcagtcatcatcagatgaaagtacaagtttagaagatattggtgataagtacttcatggattt |
7482872 |
T |
|
| Q |
216 |
acttcatagatctttctttcaagatat |
242 |
Q |
| |
|
| |||||| ||||||||||||| |||| |
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|
| T |
7482873 |
agttcataaatctttctttcaaaatat |
7482899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 7128459 - 7128239
Alignment:
| Q |
25 |
cttatcaaactaagttatgatcatctacccttttatctgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| || |||||||||| ||||| | ||| || ||||| |||||||||||| |||| || | || | |
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|
| T |
7128459 |
cttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgctttgctttttgttcattgttcccaaaagactatttaattcctaaaacaacat |
7128360 |
T |
|
| Q |
125 |
tgattcgactttggattgcacaaggtcttgttcattcatcc---gatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttca |
221 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||| | ||||||||||||||||||| |||| |||| |
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|
| T |
7128359 |
tgattcgagtttggattgcacaagggtttgttcagtcatcatcagatgaaagtacaagtttagaagatattggtgataagtacttcatggatttagttca |
7128260 |
T |
|
| Q |
222 |
tagatctttctttcaagatat |
242 |
Q |
| |
|
|| ||||||||||||| |||| |
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|
| T |
7128259 |
taaatctttctttcaaaatat |
7128239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 7528795 - 7529015
Alignment:
| Q |
25 |
cttatcaaactaagttatgatcatctacccttttatctgaaaaagtgttttgcatattgctctttgtttccaaaagactatcaaattgagaagaaaaagt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| || |||||||||| ||||| | ||| ||||||||||||||||||||| ||| || | || | |
|
|
| T |
7528795 |
cttatcaaactaagttatgatcatctaccatttcatttgaaaaagtgctttgctttttgttctttgtttccaaaagactatttcattccaaaaacaacat |
7528894 |
T |
|
| Q |
125 |
tgattcgactttggattgcacaaggtcttgttcattcatc---cgatgaaagtacaaatttagaagacaatggtgataagtacttcatgactttacttca |
221 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||| | |||| ||| |||||||||| |||| || | |
|
|
| T |
7528895 |
tgattcgactttggattgcacaagggtttgttcagtcatcagatgatgaaagtacaagtttagaagatattggtcatatgtacttcatggatttagttta |
7528994 |
T |
|
| Q |
222 |
tagatctttctttcaagatat |
242 |
Q |
| |
|
|| ||||||||||||| |||| |
|
|
| T |
7528995 |
taaatctttctttcaaaatat |
7529015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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