View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17854_low_1 (Length: 772)
Name: NF17854_low_1
Description: NF17854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17854_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 174 - 754
Target Start/End: Original strand, 7215511 - 7216091
Alignment:
| Q |
174 |
tgtttgatgacgtaaaagaaatgcacaaagtttgcataatgactgcatggtgcttgttgtctgttgacatcaagaacaacacatgagcatgtcaaagtac |
273 |
Q |
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| T |
7215511 |
tgtttgatgacgtaaaagaaatgcacaaagtttgcataatgactgcatggtgcttgttgtctgttgacatcaagaacaacacatgagcatgtcaa-gtac |
7215609 |
T |
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| Q |
274 |
gaatataacaatggcagctgattcaatgtctgttgagttgaggtgaagcatgcaagtgttatttgtataagtaactttgac-atgcatactatcacttta |
372 |
Q |
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| T |
7215610 |
gaatataacaatggcagctgattcattgtctgttgagttgaggtgaagcatgcaagtgttatttgtataagtaactttgaccatgcatgctatcacttta |
7215709 |
T |
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| Q |
373 |
atgtactttcatcaaatcttttatgaatgctacatatatatgatctttatttaattaatataactaaggtaagtatataaaacgaacaataaagtattat |
472 |
Q |
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| T |
7215710 |
atgtactttcatcaaatcttttatgaatgctacatatatatgatctttatttaattaatataactaaggtaagtatatcaaacgaacaataaagtattat |
7215809 |
T |
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| Q |
473 |
ggtaccatggagcaagcatcatctggagattcattgtctgcttgctcaagtgaagcatgtaataaagttatggtacaaccaaccttcatatctagtacta |
572 |
Q |
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| T |
7215810 |
ggtaccatggagcaagcatcatctggagattcattgtctgcttgctcaagtcaagcatgtaataaagttatggtacaaccaaccttcatatctagtacta |
7215909 |
T |
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| Q |
573 |
ttacaacaccttaggcaatcatctcaacaaaactattgatttcatatgatattttttatacaactagacatatagtgtgtttggaattgtggtcaagtta |
672 |
Q |
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| T |
7215910 |
ttacaacaccttaggcaatcatctcaacaaaactattgatttcatatgatattttttatacaactagacatatagtgtgtttggtattgtggtcaagtta |
7216009 |
T |
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| Q |
673 |
cttcagacacatcaccattctcacatcaaaaacaactttaagatgcgagaaaaacgattagaaggtgaatcgaaacatagtt |
754 |
Q |
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| T |
7216010 |
cttcagacacatcaccattctcacatcaaaaacaactttgggatgcgagaaaaacgattagaaggtgaattgaaacatagtt |
7216091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 7215336 - 7215490
Alignment:
| Q |
18 |
accttattatttattgattcaataataaaaaagacatttgtttgtgtatatggtgtaagatgattttgtttatgcatgttagacattgtgtttgtaaact |
117 |
Q |
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| T |
7215336 |
accttattatttattgattcaataataaaaaagacatttgtttgtgtatatggtgt------------tttatgcatgttagacattgtgtttgtaaact |
7215423 |
T |
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| Q |
118 |
aataacaagtgtagtaaaaaacatgtgtgtcacattaataatcatttagtgcttattgtttgatgac |
184 |
Q |
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| T |
7215424 |
aataacaagtgtagcacaaaacatgtgtgtcacattaataatcatttagtgcttattgtttgatgac |
7215490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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