View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17854_low_11 (Length: 261)
Name: NF17854_low_11
Description: NF17854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17854_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 6227397 - 6227156
Alignment:
| Q |
1 |
gccactaaggccagtgtgatgagcaatagcaacatcggcaccgatgacatgaccaaaaggctggaaaagttgaagcaaatcatggttccttgtctcgggc |
100 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6227397 |
gccactaaggccagtgtgttgagcaatagcaatatcggcaccgatgacatgaccaaaaggctggaaaagttgaagcaaatcatggttccttgtctcgggt |
6227298 |
T |
|
| Q |
101 |
gggaggttgcctacgactaccagaaaagaattcttgttcttgtcatcggaggacagagtagtcatctctttcacaaaagccttcaggtatgagggtacaa |
200 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6227297 |
gggaggttgcctcctactaccagaaaagaattcttgttcttgtcatcggaggacagagtagtcatctctttcacaaaagccttcaggtatggaggtacaa |
6227198 |
T |
|
| Q |
201 |
acatacccgcaatcggaggtgtataatcaacacgaataactg |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
6227197 |
acatacccgcaatcggaggtgtataatcaacacgaataactg |
6227156 |
T |
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