View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17854_low_12 (Length: 247)
Name: NF17854_low_12
Description: NF17854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17854_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 51875504 - 51875272
Alignment:
| Q |
1 |
ttcttgttatcacaatgcatctctctttttccggcgagagatttgaaaataaagccaaattaaatttaccaaatccattccaagaagaaacggaaacccg |
100 |
Q |
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| T |
51875504 |
ttcttgttatcacaatgcatctctctttttccggcgagagatttgaaaataaagccaaattaaatttaccaaatccattccaagaagaaactgaaactcg |
51875405 |
T |
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| Q |
101 |
ctatcgtttgcaccatttcaatattttaaatttaggcggtattaatgactttatttgtgtcaattgttaaaattgatataagagttgcattatggaatcc |
200 |
Q |
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| T |
51875404 |
ctatcgtttgcaccatttcaatattttaaatttaggcggtattaatgactttatttgtgtcaattgttaaaattgatataagagttgcattatggaatcc |
51875305 |
T |
|
| Q |
201 |
aactacagatgaattcaaggtcattcctcacag |
233 |
Q |
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| T |
51875304 |
aactacagatgaattcaaggtcattcctcacag |
51875272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 41227233 - 41227375
Alignment:
| Q |
27 |
ttttccggcgagagatttgaaaataaagccaaattaaatttaccaaatccattccaagaagaaacggaaacccgctatcgtttgcaccatttcaatattt |
126 |
Q |
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| T |
41227233 |
ttttctggcgagaaatttgaaaatagcgccaaattaaatctaccaaatccatttcaagaaggaagtgaaactccttaacgtttccaccattttgatattt |
41227332 |
T |
|
| Q |
127 |
taaatttaggcggtattaatgactttatttgtgtcaattgtta |
169 |
Q |
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| T |
41227333 |
tagatttgggcggtttgaatgactttatttgtgtcaaatgtta |
41227375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 42782488 - 42782632
Alignment:
| Q |
24 |
tctttttccggcgagagatttgaaaataaagccaaattaaatttaccaaatccattccaagaagaaacggaaacccgctatcgtttgcaccatttcaata |
123 |
Q |
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| T |
42782488 |
tctttttctggcgagaaatttgaaaatacagccaaattaattctaccaaatccatttcaagaaggaagtgaaactccttatcgtttctaccgttttgaaa |
42782587 |
T |
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| Q |
124 |
ttttaaatttaggcggtattaatgactttatttgtgtcaattgtt |
168 |
Q |
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| T |
42782588 |
tttttgatttcggcggttttaatgactttatttgtgtcaaatgtt |
42782632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 161
Target Start/End: Complemental strand, 27174216 - 27174091
Alignment:
| Q |
36 |
gagagatttgaaaataaagccaaattaaatttaccaaatccattccaagaagaaacggaaacccgctatcgtttgcaccatttcaatattttaaatttag |
135 |
Q |
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| T |
27174216 |
gagagatttgaaaatagagccaaattaaatctgccaaatccatttcaagaaggatctgaagctccttatcgttttcaccgttttaatattttaaatctgg |
27174117 |
T |
|
| Q |
136 |
gcggtattaatgactttatttgtgtc |
161 |
Q |
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| | | ||||| |||||||||||||| |
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| T |
27174116 |
gggattttaataactttatttgtgtc |
27174091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 27174055 - 27174005
Alignment:
| Q |
180 |
aagagttgcattatggaatccaactacagatgaattcaaggtcattcctca |
230 |
Q |
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| T |
27174055 |
aagatttgcactatggaatccaactacagacgaattcaaggtcattcctca |
27174005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 42782684 - 42782729
Alignment:
| Q |
185 |
ttgcattatggaatccaactacagatgaattcaaggtcattcctca |
230 |
Q |
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| T |
42782684 |
ttgcactatggaatccaactacagaggaattcaaggtcattcctca |
42782729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 41227397 - 41227453
Alignment:
| Q |
174 |
tgatataagagttgcattatggaatccaactacagatgaattcaaggtcattcctca |
230 |
Q |
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| T |
41227397 |
tgatgtaagatttgcactctggaatccaactaccgacgaattcaaggtcattcctca |
41227453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 32642224 - 32642291
Alignment:
| Q |
30 |
tccggcgagagatttgaaaataaagccaaattaaatttaccaaatccattccaagaagaaacggaaac |
97 |
Q |
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| T |
32642224 |
tccggtgaaagatttgagaatttagccaaattaaatttaccacatccatttcaagaaggaactgaaac |
32642291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 21379034 - 21378996
Alignment:
| Q |
191 |
tatggaatccaactacagatgaattcaaggtcattcctc |
229 |
Q |
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| T |
21379034 |
tatggaatccaactacagatgaattaaaggtcattcctc |
21378996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 21374941 - 21374903
Alignment:
| Q |
191 |
tatggaatccaactacagatgaattcaaggtcattcctc |
229 |
Q |
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| T |
21374941 |
tatggaatccaactacggatgaattaaaggtcattcctc |
21374903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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