View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17854_low_13 (Length: 241)
Name: NF17854_low_13
Description: NF17854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17854_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 10011392 - 10011179
Alignment:
| Q |
1 |
ttgtccaaatccaagctctgtggtagtgttctannnnnnnnactgatatgaatttgatgtccaactcttctaaatcatttttgtctcccttcgaaaaagg |
100 |
Q |
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| T |
10011392 |
ttgtccaaatccaagctctgtggtggtgttctattttttt-actgatatgaatttgatgtccaactcttctaaatcatttatgtctcccttcgaaaaagg |
10011294 |
T |
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| Q |
101 |
aaagnnnnnnnnctcgtctgcttcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggag |
200 |
Q |
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| T |
10011293 |
aaagaaaaataactcttctgcttcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggag |
10011194 |
T |
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| Q |
201 |
cacctctcttctata |
215 |
Q |
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||||||||||||||| |
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| T |
10011193 |
cacctctcttctata |
10011179 |
T |
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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 561652 - 561565
Alignment:
| Q |
123 |
tcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctctt |
210 |
Q |
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| T |
561652 |
tcagaaacgagaaagaatatagaagaaaaggacaattttgaaggaaaaaatttgatgtccaattctccaaaacaggaacacctctctt |
561565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 17688782 - 17688868
Alignment:
| Q |
123 |
tcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctctt |
210 |
Q |
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| T |
17688782 |
tcagaaacgagaaagaatatagaagaaaaggacaa-ttttaaagaaaaaatttgatgtctaattctccaaaacaggaacacctctctt |
17688868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 1678954 - 1678868
Alignment:
| Q |
123 |
tcagaaacgagaaagaatatagaacaaaaagacaatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctctt |
210 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| || ||||| ||| ||||| ||||||||||||||||| |||||||||| |
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| T |
1678954 |
tcagaaacgagaaagaatatagaagaaaaggacaattttgaa-gaaaaaatttgatgtctaattctccaaaacaggaacacctctctt |
1678868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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