View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17854_low_15 (Length: 211)
Name: NF17854_low_15
Description: NF17854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17854_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 5811824 - 5811686
Alignment:
| Q |
55 |
gaagtggtgcccaagagttagatctagagggccaagaagatactttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagagga |
154 |
Q |
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| T |
5811824 |
gaagtggtgcccaagagttagatctagagggccaagaagatattttcggagaggatgttgccaatgataagtctcaagggactgcaaccgaggaagagga |
5811725 |
T |
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| Q |
155 |
gaaattatcaaatccagaagttaagaaataagttcctga |
193 |
Q |
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| T |
5811724 |
gaaattatcaaatccagaagttaagaaagaagttcctga |
5811686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 37743420 - 37743266
Alignment:
| Q |
28 |
gtaataacccttccgaaagaaacccaggaagtggtgcccaagagttagatctagagggccaagaagatactttcggagaggatgttgccaatgataagtc |
127 |
Q |
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| T |
37743420 |
gtaataacccttctgaaacaaccccaagaagtggtgctcaagagttagatctagaagaccaaaaaaataccgttggaaaggatgttgccaatgataagtc |
37743321 |
T |
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| Q |
128 |
tcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaa |
182 |
Q |
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| T |
37743320 |
tcaagtgaatgcaactgaggaagaggggcaattatcaaatccagaagataagaaa |
37743266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 37764605 - 37764449
Alignment:
| Q |
26 |
tggtaataacccttccgaaagaaacccaggaagtggtgcccaagagttagatctagagggccaagaagatactttcggagaggatgttgccaatgataag |
125 |
Q |
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| T |
37764605 |
tggtaataacccttttgaaagaacaccaagaagtggtgctcaagagttagatctagaagaccaagaaaatactgttggaaaggatgtagccaatgataag |
37764506 |
T |
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| Q |
126 |
tctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaa |
182 |
Q |
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| T |
37764505 |
tctcaagtgaattcaactgaggaagaggggcaattatcaaatccagaagataagaaa |
37764449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 38601711 - 38601867
Alignment:
| Q |
26 |
tggtaataacccttccgaaagaaacccaggaagtggtgcccaagagttagatctagagggccaagaagatactttcggagaggatgttgccaatgataag |
125 |
Q |
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| T |
38601711 |
tggtaataaccctgttgaaagaaccccaagaagtggtgctcaagagttagatctagaagaccaagaaaatactgttggaaaggatgtagccaatgataag |
38601810 |
T |
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| Q |
126 |
tctcaagggactgcaaccgaggaagaggagaaattatcaaatccagaagttaagaaa |
182 |
Q |
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| T |
38601811 |
tctcaagtgaatgcaactgaggaagaggggcaattatcaaatccagaatataagaaa |
38601867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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