View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17854_low_2 (Length: 637)

Name: NF17854_low_2
Description: NF17854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17854_low_2
NF17854_low_2
[»] chr5 (16 HSPs)
chr5 (1-622)||(16801457-16802078)
chr5 (541-622)||(14152534-14152616)
chr5 (557-622)||(3600096-3600161)
chr5 (557-622)||(6102814-6102879)
chr5 (540-622)||(6830236-6830319)
chr5 (540-591)||(39034545-39034596)
chr5 (576-622)||(12036370-12036416)
chr5 (541-622)||(5471048-5471129)
chr5 (542-622)||(7609602-7609682)
chr5 (544-622)||(28511211-28511290)
chr5 (531-622)||(41180682-41180776)
chr5 (543-598)||(2033418-2033473)
chr5 (570-620)||(15139231-15139281)
chr5 (581-622)||(20527069-20527110)
chr5 (538-622)||(31619287-31619370)
chr5 (566-622)||(35185251-35185307)
[»] chr7 (8 HSPs)
chr7 (541-622)||(24937801-24937882)
chr7 (557-622)||(39786514-39786580)
chr7 (543-622)||(47537397-47537476)
chr7 (543-601)||(37532639-37532697)
chr7 (541-606)||(48856273-48856338)
chr7 (544-622)||(26241667-26241746)
chr7 (572-622)||(32279717-32279767)
chr7 (536-608)||(16979906-16979978)
[»] chr3 (5 HSPs)
chr3 (541-620)||(19202398-19202477)
chr3 (542-622)||(34228320-34228400)
chr3 (541-622)||(44291292-44291373)
chr3 (570-622)||(40491266-40491319)
chr3 (570-622)||(28940573-28940624)
[»] scaffold0017 (1 HSPs)
scaffold0017 (543-608)||(31439-31504)
[»] chr4 (14 HSPs)
chr4 (542-622)||(16831163-16831243)
chr4 (542-622)||(35808568-35808648)
chr4 (541-608)||(48524464-48524531)
chr4 (542-621)||(55090752-55090830)
chr4 (542-622)||(5645710-5645789)
chr4 (542-622)||(31647692-31647772)
chr4 (538-619)||(9119207-9119289)
chr4 (542-620)||(37992826-37992904)
chr4 (570-608)||(53142779-53142817)
chr4 (542-588)||(4859900-4859946)
chr4 (542-621)||(34236150-34236231)
chr4 (565-622)||(2908273-2908330)
chr4 (569-622)||(28299352-28299405)
chr4 (570-622)||(37461828-37461880)
[»] scaffold0299 (1 HSPs)
scaffold0299 (542-608)||(18094-18160)
[»] chr2 (7 HSPs)
chr2 (542-608)||(1870570-1870636)
chr2 (541-619)||(35710804-35710882)
chr2 (533-622)||(13835796-13835887)
chr2 (571-622)||(34501656-34501707)
chr2 (542-608)||(43080382-43080448)
chr2 (585-621)||(13618193-13618229)
chr2 (556-608)||(13738472-13738524)
[»] chr6 (6 HSPs)
chr6 (544-622)||(6770805-6770885)
chr6 (541-622)||(9213104-9213188)
chr6 (542-608)||(32800174-32800240)
chr6 (539-601)||(20208193-20208255)
chr6 (539-601)||(22102216-22102278)
chr6 (575-622)||(16969640-16969687)
[»] chr8 (5 HSPs)
chr8 (570-622)||(18131190-18131242)
chr8 (542-610)||(19781436-19781505)
chr8 (584-622)||(15869073-15869111)
chr8 (542-608)||(43917557-43917623)
chr8 (542-622)||(27283262-27283342)
[»] chr1 (9 HSPs)
chr1 (543-622)||(8778619-8778699)
chr1 (541-608)||(13969176-13969243)
chr1 (541-622)||(50127410-50127491)
chr1 (542-622)||(27478-27549)
chr1 (567-622)||(33827887-33827942)
chr1 (567-622)||(33840023-33840078)
chr1 (570-623)||(34382694-34382747)
chr1 (542-622)||(26855889-26855968)
chr1 (543-579)||(38014206-38014242)
[»] scaffold0016 (1 HSPs)
scaffold0016 (542-603)||(82962-83022)
[»] scaffold0123 (1 HSPs)
scaffold0123 (570-622)||(17532-17585)


Alignment Details
Target: chr5 (Bit Score: 610; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 1 - 622
Target Start/End: Original strand, 16801457 - 16802078
Alignment:
Q  1 tatccttgctattgttggtagagtgccgttaatcaagactgtagttcaaaatatgattcttcattatatttccatctactcttggccagtaagcttactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16801457 tatccttgctattgttggtagagtgccgttaatcaagactgtagttcaaaatatgattcttcattatatttccatctactcttggccagtaagcttactt 16801556  T
Q  101 aaagatatggaaatgtggttgagaaattcatctggattagtcatagaaatagggcttcggattagagatttgtcaagtatcaatgaagtagcaaatatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16801557 aaagatatggaaatgtggttgagaaattcatctggattagtcatagaaatagggcttcgaattagagatttgtcaagtatcaatgaagtagcaaatatta 16801656  T
Q  201 taaagctttgtttgggatatcattcaatcagatttgcaacagtgggttcaatttctcaaaattagagtaatctgaaagaagaaaaaacaagctggttgct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16801657 taaagctttgtttgggatatcattcaatcagatttgcaacagtgggttcaatttctcaaaattagagtaatctgaaagaagaaaaaacaagctggttgct 16801756  T
Q  301 tatcatgttttatcatctgttttgagaagtgaaaaacacaatttttctaagcattatggtgaatacttcttgtcggattgacaatgggttgaattatagg 400  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16801757 tatcatgttttatcatctgttttgagaagtgcaaaacacaatttttctaagcattatggtgaatacttcttgtcggattgacaatgggttgaattatagg 16801856  T
Q  401 ttccaaactattttgtagcgttctgttatgttattttcatgatcattcctctcaacaaaaatcagttgtaggtgtaagaattctaccaagaaattcagtt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16801857 ttccaaactattttgtagcgttctgttatgttattttcatgatcattcctctgaacaaaaatcagttgtaggtgtaagaattctaccaagaaattcagtt 16801956  T
Q  501 ataaaattgcgtatataaattagttatatcaattttcttttggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16801957 ataaaattgcgtatataaattagttatatcaattttcttttggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttt 16802056  T
Q  601 tataaaaagtaatgtaattatt 622  Q
    ||||||||||||||||||||||    
T  16802057 tataaaaagtaatgtaattatt 16802078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 541 - 622
Target Start/End: Complemental strand, 14152616 - 14152534
Alignment:
Q  541 tggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataac-tttttataaaaagtaatgtaattatt 622  Q
    ||||||||| |||||| |||| | ||||||||||||||| ||||||||||| |||| ||||||||||||||  ||||||||||    
T  14152616 tggagaatgctaaacaatgccttaagggtattggttaagtaaccaaaacaagtaacttttttataaaaagtggtgtaattatt 14152534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 557 - 622
Target Start/End: Original strand, 3600096 - 3600161
Alignment:
Q  557 gtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    |||| ||||||  |||| |||||||||||||| ||| |||||||||||||||||||||||||||||    
T  3600096 gtgctctcaggacattgattaagcaaccaaaataaaaaactttttataaaaagtaatgtaattatt 3600161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 557 - 622
Target Start/End: Original strand, 6102814 - 6102879
Alignment:
Q  557 gtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    ||||||||| || ||||||||||||||||||| || ||||||||||| ||||||| ||||||||||    
T  6102814 gtgccctcaaggcattggttaagcaaccaaaataagtaactttttattaaaagtattgtaattatt 6102879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 622
Target Start/End: Original strand, 6830236 - 6830319
Alignment:
Q  540 ttggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataa-ctttttataaaaagtaatgtaattatt 622  Q
    ||||||||||||||||| |   |||| || |||||||||||||||||||||| |||  ||||||| ||||||| ||||||||||    
T  6830236 ttggagaatgttaaacaatattctcaaggcattggttaagcaaccaaaacaagtaatttttttattaaaagtagtgtaattatt 6830319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 591
Target Start/End: Complemental strand, 39034596 - 39034545
Alignment:
Q  540 ttggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaa 591  Q
    |||||||||| ||||||||||||| |||| ||||||| ||||||||||||||    
T  39034596 ttggagaatgctaaacagtgccctgagggcattggtttagcaaccaaaacaa 39034545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 576 - 622
Target Start/End: Complemental strand, 12036416 - 12036370
Alignment:
Q  576 taagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||||    
T  12036416 taagtaaccaaaataaataactttttattaaaagtaatgtaattatt 12036370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 541 - 622
Target Start/End: Original strand, 5471048 - 5471129
Alignment:
Q  541 tggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    ||||||||| | |||| |||  |||||||||| ||||||||| ||||| ||  ||||||||||||||| |||||| ||||||    
T  5471048 tggagaatgctgaacaatgcattcagggtattagttaagcaatcaaaataagaaactttttataaaaaataatgttattatt 5471129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 542 - 622
Target Start/End: Complemental strand, 7609682 - 7609602
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttat-aaaaagtaatgtaattatt 622  Q
    |||||||||||| |||||| | | ||| |||||||||||| |||||| || ||| ||||||| |||||||||||||||||||    
T  7609682 ggagaatgttaaccagtgctcccggggcattggttaagca-ccaaaagaagtaagtttttattaaaaagtaatgtaattatt 7609602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 544 - 622
Target Start/End: Complemental strand, 28511290 - 28511211
Alignment:
Q  544 agaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttata--aaaagtaatgtaattatt 622  Q
    |||||||||| | |||||||  |||||||||||||||||||||||||  ||| ||||||||  ||||||| ||||||||||    
T  28511290 agaatgttaaccggtgccctg-gggtattggttaagcaaccaaaacatgtaagtttttataaaaaaagtagtgtaattatt 28511211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 622
Target Start/End: Complemental strand, 41180776 - 41180682
Alignment:
Q  531 aattttcttttggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataa---ctttttataaaaagtaatgtaattatt 622  Q
    |||||| || ||||||||||||||| ||||| | |  | ||||||||| ||||||||| ||||||   |||||||| ||||||| ||||||||||    
T  41180776 aattttattatggagaatgttaaacggtgcctttatagcattggttaaacaaccaaaataaataataactttttattaaaagtagtgtaattatt 41180682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 598
Target Start/End: Original strand, 2033418 - 2033473
Alignment:
Q  543 gagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactt 598  Q
    ||||||||||||||||||| | | ||||||| |||| ||||||||| |||||||||    
T  2033418 gagaatgttaaacagtgcctttaaggtattgattaaacaaccaaaataaataactt 2033473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 570 - 620
Target Start/End: Complemental strand, 15139281 - 15139231
Alignment:
Q  570 attggttaagcaaccaaaacaaataactttttataaaaagtaatgtaatta 620  Q
    ||||||||||||| ||||| || ||| ||||||||||||||| ||||||||    
T  15139281 attggttaagcaatcaaaataagtaattttttataaaaagtagtgtaatta 15139231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 622
Target Start/End: Complemental strand, 20527110 - 20527069
Alignment:
Q  581 aaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    ||||||||||| |||||||||| ||||||| |||||||||||    
T  20527110 aaccaaaacaagtaactttttagaaaaagtgatgtaattatt 20527069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 622
Target Start/End: Original strand, 31619287 - 31619370
Alignment:
Q  538 ttttggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttat-aaaaagtaatgtaattatt 622  Q
    ||||||| |||||||| ||||||| || ||| |||||||||||| |||||  || ||| ||||||| |||||||||||||||||||    
T  31619287 ttttggaaaatgttaaccagtgcc-tctgggcattggttaagca-ccaaatgaagtaaatttttattaaaaagtaatgtaattatt 31619370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 566 - 622
Target Start/End: Original strand, 35185251 - 35185307
Alignment:
Q  566 gggtattggttaagcaaccaaaacaaataactttttat-aaaaagtaatgtaattatt 622  Q
    |||||||||||||||| |||||  |||||| ||||||| |||||||||||||||||||    
T  35185251 gggtattggttaagca-ccaaataaaataagtttttattaaaaagtaatgtaattatt 35185307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 541 - 622
Target Start/End: Original strand, 24937801 - 24937882
Alignment:
Q  541 tggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    ||||||||||||||| |||||||||||| |||||||||| |||||||| || ||||||||||||||||||  ||||||||||    
T  24937801 tggagaatgttaaacggtgccctcagggcattggttaaggaaccaaaataagtaactttttataaaaagtggtgtaattatt 24937882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 557 - 622
Target Start/End: Complemental strand, 39786580 - 39786514
Alignment:
Q  557 gtgccctcagggtattggttaagcaaccaaaacaaataact-ttttataaaaagtaatgtaattatt 622  Q
    ||||||||| || |||||||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  39786580 gtgccctcaaggcattggttaagcaaccaaaacaaataacttttttattaaaagtagtgtaattatt 39786514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 47537397 - 47537476
Alignment:
Q  543 gagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    ||||||||||||| ||||||| |||  ||| |||||||||| ||||||  ||||||||||||||||||  ||||||||||    
T  47537397 gagaatgttaaacggtgcccttaggacattagttaagcaactaaaacaggtaactttttataaaaagttgtgtaattatt 47537476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 601
Target Start/End: Complemental strand, 37532697 - 37532639
Alignment:
Q  543 gagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataacttttt 601  Q
    |||||||  ||||| ||||||||||||| ||||||||||||| |||||| |||||||||    
T  37532697 gagaatgccaaacattgccctcagggtaatggttaagcaaccgaaacaagtaacttttt 37532639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 541 - 606
Target Start/End: Complemental strand, 48856338 - 48856273
Alignment:
Q  541 tggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaa 606  Q
    |||||||||||||||||||  || ||| ||||| ||||||||  ||||||||||| ||||||||||    
T  48856338 tggagaatgttaaacagtgttcttaggatattgattaagcaataaaaacaaataattttttataaa 48856273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 544 - 622
Target Start/End: Complemental strand, 26241746 - 26241667
Alignment:
Q  544 agaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataacttttt-ataaaaagtaatgtaattatt 622  Q
    |||||||||| || || | | ||||||| ||||||||||| ||||||| ||||||||| |||||||||| | ||||||||    
T  26241746 agaatgttaaccaatgtcttaagggtatcggttaagcaactaaaacaagtaactttttaataaaaagtagtataattatt 26241667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 572 - 622
Target Start/End: Complemental strand, 32279767 - 32279717
Alignment:
Q  572 tggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    |||||||||||| |||||||  |||||||||| |||| |||||||||||||    
T  32279767 tggttaagcaactaaaacaatcaactttttattaaaaataatgtaattatt 32279717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 536 - 608
Target Start/End: Original strand, 16979906 - 16979978
Alignment:
Q  536 tcttttggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaa 608  Q
    |||||||||||||| |||   |||| || |||| |||||||||||| ||||||||| ||| ||||||| ||||    
T  16979906 tcttttggagaatgctaactggtgctctaagggcattggttaagcatccaaaacaagtaaatttttatgaaaa 16979978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 541 - 620
Target Start/End: Complemental strand, 19202477 - 19202398
Alignment:
Q  541 tggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaatta 620  Q
    |||||||||||||||| || |||||||| |||||||||||||| ||||||| ||||||||||| ||||||| ||||||||    
T  19202477 tggagaatgttaaacaatggcctcagggcattggttaagcaactaaaacaattaactttttattaaaagtagtgtaatta 19202398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 542 - 622
Target Start/End: Complemental strand, 34228400 - 34228320
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    ||||||||  |||||||||||| | ||||||||||||||||  ||||| | |||||||||||||||||| ||| |||||||    
T  34228400 ggagaatgccaaacagtgcccttaaggtattggttaagcaattaaaacgagtaactttttataaaaagtgatgaaattatt 34228320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 622
Target Start/End: Complemental strand, 44291373 - 44291292
Alignment:
Q  541 tggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataacttttta-taaaaagtaatgtaattatt 622  Q
    ||||||||||||| |||||||| | ||| ||||||||||| ||||||| || ||| | |||| ||||||||||||||||||||    
T  44291373 tggagaatgttaaccagtgcccccggggcattggttaagc-accaaaagaagtaagtatttattaaaaagtaatgtaattatt 44291292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 622
Target Start/End: Complemental strand, 40491319 - 40491266
Alignment:
Q  570 attggttaagcaaccaaaacaaata-actttttataaaaagtaatgtaattatt 622  Q
    ||||||||| ||||||||||||||| | |||||||||||  |||||||||||||    
T  40491319 attggttaaacaaccaaaacaaatatattttttataaaatataatgtaattatt 40491266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 622
Target Start/End: Original strand, 28940573 - 28940624
Alignment:
Q  570 attggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    |||||||||| | |||||||||||||||||||| ||||| | |||||||||||    
T  28940573 attggttaagtagccaaaacaaataactttttagaaaaa-tgatgtaattatt 28940624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 543 - 608
Target Start/End: Original strand, 31439 - 31504
Alignment:
Q  543 gagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaa 608  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  31439 gagaatgttaaacagtaccctcaatgtattggttaagcaaccaaaacaagtaactttttataaaaa 31504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 542 - 622
Target Start/End: Complemental strand, 16831243 - 16831163
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    |||||||| ||||||||| ||| | || |||| ||||||||||||||||||||||||||||||||||||| | ||||||||    
T  16831243 ggagaatgctaaacagtgtccttaaggcattgattaagcaaccaaaacaaataactttttataaaaagtagtataattatt 16831163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 542 - 622
Target Start/End: Complemental strand, 35808648 - 35808568
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    |||||||||||||||||| ||||| |  ||||||||||||||||||| || ||||||||||||||||||  ||||||||||    
T  35808648 ggagaatgttaaacagtgtcctcaagtcattggttaagcaaccaaaataagtaactttttataaaaagttgtgtaattatt 35808568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 541 - 608
Target Start/End: Original strand, 48524464 - 48524531
Alignment:
Q  541 tggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaa 608  Q
    |||||||||||||||| ||| |||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  48524464 tggagaatgttaaacattgctctcaggatattgattaagcaaccaaaacaagtaactttttataaaaa 48524531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 542 - 621
Target Start/End: Original strand, 55090752 - 55090830
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattat 621  Q
    |||||||||||||||||| | | ||| ||||||||||||||| ||||||| ||||||||||||||||||  |||||||||    
T  55090752 ggagaatgttaaacagtgtctt-aggatattggttaagcaactaaaacaagtaactttttataaaaagttgtgtaattat 55090830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 542 - 622
Target Start/End: Complemental strand, 5645789 - 5645710
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    |||||||| ||||||||  ||| |||| ||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||    
T  5645789 ggagaatgctaaacagtatcctgagggcatttgttaag-aactaaaacaaataactttttataaaaagtagtgtaattatt 5645710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 542 - 622
Target Start/End: Original strand, 31647692 - 31647772
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataacttttta-taaaaagtaatgtaattatt 622  Q
    |||||||||||| | |||||| |  |||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||||    
T  31647692 ggagaatgttaaccggtgcccccgaggtattggttaagc-accaaaagaaataagtttttattaaaaagtaatgtaattatt 31647772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 619
Target Start/End: Original strand, 9119207 - 9119289
Alignment:
Q  538 ttttggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataa-ctttttataaaaagtaatgtaatt 619  Q
    |||||||||||| |||| ||||| || | ||||| ||||||||||||||||||| |||  ||||||| ||||||| |||||||    
T  9119207 ttttggagaatgctaaatagtgctctaaaggtatcggttaagcaaccaaaacaagtaatttttttattaaaagtagtgtaatt 9119289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 620
Target Start/End: Original strand, 37992826 - 37992904
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaatta 620  Q
    |||||||| ||||| ||||||||| |  ||  ||||| ||| |||||||| ||||||||||| ||||||||||||||||    
T  37992826 ggagaatgctaaacggtgccctcatgacatcagttaaacaatcaaaacaagtaactttttattaaaagtaatgtaatta 37992904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 570 - 608
Target Start/End: Original strand, 53142779 - 53142817
Alignment:
Q  570 attggttaagcaaccaaaacaaataactttttataaaaa 608  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  53142779 attggttaagcaaccgaaacaaataactttttataaaaa 53142817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 588
Target Start/End: Original strand, 4859900 - 4859946
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaa 588  Q
    |||||||| ||||||||||| |||||| ||||||||| |||||||||    
T  4859900 ggagaatgctaaacagtgccatcagggcattggttaaacaaccaaaa 4859946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 621
Target Start/End: Original strand, 34236150 - 34236231
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataa--ctttttataaaaagtaatgtaattat 621  Q
    |||||||| ||||||| || || |||| ||||||||| |||||||||||| |||   |||||||||||| || |||||||||    
T  34236150 ggagaatgataaacagcgctcttagggcattggttaaacaaccaaaacaagtaattttttttataaaaaatagtgtaattat 34236231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 622
Target Start/End: Complemental strand, 2908330 - 2908273
Alignment:
Q  565 agggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    |||| ||||||||||||||||||| || | |||||||||| |||||  ||||||||||    
T  2908330 agggcattggttaagcaaccaaaataagtgactttttatagaaagtggtgtaattatt 2908273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 622
Target Start/End: Complemental strand, 28299405 - 28299352
Alignment:
Q  569 tattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    |||| ||||||| |||||| ||| ||||||||||||||| || |||||||||||    
T  28299405 tattagttaagctaccaaagcaagtaactttttataaaatgtgatgtaattatt 28299352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 570 - 622
Target Start/End: Complemental strand, 37461880 - 37461828
Alignment:
Q  570 attggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    |||||||||||||  |||| || ||||||||||||||||||  ||||||||||    
T  37461880 attggttaagcaattaaaataagtaactttttataaaaagtggtgtaattatt 37461828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 542 - 608
Target Start/End: Complemental strand, 18160 - 18094
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaa 608  Q
    |||||||| |||||||| || |||||| |||||||||||||||||||||| ||||||||||||||||    
T  18160 ggagaatgctaaacagtaccgtcagggcattggttaagcaaccaaaacaagtaactttttataaaaa 18094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 542 - 608
Target Start/End: Complemental strand, 1870636 - 1870570
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaa 608  Q
    |||||||| |||||||||||||| ||| |||||||||||||| ||||||| ||||||||||||||||    
T  1870636 ggagaatgctaaacagtgccctcggggcattggttaagcaacaaaaacaagtaactttttataaaaa 1870570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 541 - 619
Target Start/End: Complemental strand, 35710882 - 35710804
Alignment:
Q  541 tggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaatt 619  Q
    ||||||||| |||||| ||  |||| | |||||||||||||| ||||| ||||||||||||||||||| ||||||||||    
T  35710882 tggagaatgctaaacaatgatctcatgatattggttaagcaagcaaaataaataactttttataaaaaataatgtaatt 35710804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 533 - 622
Target Start/End: Original strand, 13835796 - 13835887
Alignment:
Q  533 ttttcttttggagaatgttaaacagtgccctcagg--gtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    |||||||  ||||||||||||| |||| | ||||   ||||||||||||||| ||||| |||||| |||||||||||| || ||||||||||    
T  13835796 ttttcttaaggagaatgttaaatagtgtcatcagatcgtattggttaagcaagcaaaataaataattttttataaaaaatagtgtaattatt 13835887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 571 - 622
Target Start/End: Complemental strand, 34501707 - 34501656
Alignment:
Q  571 ttggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    ||||||||||||||||| |||||||||||||||||||| |  ||||||||||    
T  34501707 ttggttaagcaaccaaatcaaataactttttataaaaaattgtgtaattatt 34501656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 608
Target Start/End: Complemental strand, 43080448 - 43080382
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaa 608  Q
    |||||||||||| ||||||||| ||| ||||||||||||| |||||||||  || ||||||| ||||    
T  43080448 ggagaatgttaaccagtgccctgaggatattggttaagcatccaaaacaatcaaatttttatgaaaa 43080382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 621
Target Start/End: Original strand, 13618193 - 13618229
Alignment:
Q  585 aaaacaaataactttttataaaaagtaatgtaattat 621  Q
    ||||||||||||||||||||||||||  |||||||||    
T  13618193 aaaacaaataactttttataaaaagtggtgtaattat 13618229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 608
Target Start/End: Complemental strand, 13738524 - 13738472
Alignment:
Q  556 agtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaa 608  Q
    |||| ||| ||| ||||||||||||| ||||||||| ||| ||||||||||||    
T  13738524 agtgtcctaaggatattggttaagcatccaaaacaagtaagtttttataaaaa 13738472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 622
Target Start/End: Original strand, 6770805 - 6770885
Alignment:
Q  544 agaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttat--aaaaagtaatgtaattatt 622  Q
    ||||||||||||||| || | |||| |||||||||||||||||||||| | |||||||||  ||||||| |||||||||||    
T  6770805 agaatgttaaacagtaccattagggcattggttaagcaaccaaaacaagtcactttttataaaaaaagttatgtaattatt 6770885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 622
Target Start/End: Complemental strand, 9213188 - 9213104
Alignment:
Q  541 tggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaaca---aataactttttataaaaagtaatgtaattatt 622  Q
    |||| ||||||||||| |||||||| |  |||||||||| ||||||||||   | ||||||||||||||||||| ||||||||||    
T  9213188 tggaaaatgttaaacaatgccctcaagacattggttaagaaaccaaaacaagcagtaactttttataaaaagtagtgtaattatt 9213104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 608
Target Start/End: Original strand, 32800174 - 32800240
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaa 608  Q
    |||||||| |||||||||||||||||| ||| |||||||||||||||  | ||| ||||||||||||    
T  32800174 ggagaatgctaaacagtgccctcagggcatttgttaagcaaccaaaagtagtaattttttataaaaa 32800240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 539 - 601
Target Start/End: Complemental strand, 20208255 - 20208193
Alignment:
Q  539 tttggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataacttttt 601  Q
    ||||||||||| |||| ||| |||||| || ||||||||| |||||||||||| |||||||||    
T  20208255 tttggagaatgctaaatagttccctcaaggcattggttaaacaaccaaaacaagtaacttttt 20208193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 539 - 601
Target Start/End: Complemental strand, 22102278 - 22102216
Alignment:
Q  539 tttggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataacttttt 601  Q
    ||||||||||| |||| ||| |||||| || ||||||||| |||||||||||| |||||||||    
T  22102278 tttggagaatgctaaatagttccctcaaggcattggttaaacaaccaaaacaagtaacttttt 22102216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 575 - 622
Target Start/End: Complemental strand, 16969687 - 16969640
Alignment:
Q  575 ttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    ||||||||||||||||||||||||||   ||||||| |||||||||||    
T  16969687 ttaagcaaccaaaacaaataacttttataaaaaagtgatgtaattatt 16969640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 570 - 622
Target Start/End: Original strand, 18131190 - 18131242
Alignment:
Q  570 attggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  18131190 attggttaagcaaccaaaacaagtaactttttattaaaagtagtgtaattatt 18131242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 542 - 610
Target Start/End: Complemental strand, 19781505 - 19781436
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataa-ctttttataaaaagt 610  Q
    ||||||||||||||||||| |   ||| |||||||||||||||||||||| |||  ||||||||||||||    
T  19781505 ggagaatgttaaacagtgctcctggggcattggttaagcaaccaaaacaagtaatttttttataaaaagt 19781436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 622
Target Start/End: Complemental strand, 15869111 - 15869073
Alignment:
Q  584 caaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  15869111 caaaataaataactttttatataaagtaatgtaattatt 15869073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 608
Target Start/End: Original strand, 43917557 - 43917623
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaa 608  Q
    |||||||| ||| ||||||  | ||| ||||||||||||| ||||||||| ||| ||||||||||||    
T  43917557 ggagaatgctaaccagtgcattaaggatattggttaagcatccaaaacaagtaaatttttataaaaa 43917623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 622
Target Start/End: Original strand, 27283262 - 27283342
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    |||||||||| ||| || |||||||| ||||| ||||||||| ||| | | ||| ||||||||||| ||  ||||||||||    
T  27283262 ggagaatgttgaaccgtaccctcaggatattgattaagcaactaaaccgagtaattttttataaaatgttctgtaattatt 27283342  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 543 - 622
Target Start/End: Original strand, 8778619 - 8778699
Alignment:
Q  543 gagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataacttttt-ataaaaagtaatgtaattatt 622  Q
    |||||||||| | |||||||||| |||| ||||||| ||||| |||||||||| ||||| || ||||||||||||||||||    
T  8778619 gagaatgttagagagtgccctcaaggtaatggttaaacaaccgaaacaaataatttttttattaaaagtaatgtaattatt 8778699  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 541 - 608
Target Start/End: Complemental strand, 13969243 - 13969176
Alignment:
Q  541 tggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaa 608  Q
    ||||||||||||| ||||||||  || |||||||||||||||||||||||| ||| ||||||| ||||    
T  13969243 tggagaatgttaaccagtgccccaagagtattggttaagcaaccaaaacaagtaagtttttatgaaaa 13969176  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 541 - 622
Target Start/End: Complemental strand, 50127491 - 50127410
Alignment:
Q  541 tggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataacttttta-taaaaagtaatgtaattatt 622  Q
    ||||||||||||| |||||||| | ||| ||||||||||  ||||||| || ||| |||||| ||||||||||||||||||||    
T  50127491 tggagaatgttaaccagtgcccccggggcattggttaag-taccaaaagaagtaagtttttattaaaaagtaatgtaattatt 50127410  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 542 - 622
Target Start/End: Original strand, 27478 - 27549
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    ||||||||||||||||||||||||||  |||||||         |||||| ||||||||||||||||||| ||||||||||    
T  27478 ggagaatgttaaacagtgccctcaggaaattggtt---------aaacaagtaactttttataaaaagtagtgtaattatt 27549  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 622
Target Start/End: Complemental strand, 33827942 - 33827887
Alignment:
Q  567 ggtattggttaagcaaccaaaacaaataactttttat-aaaaagtaatgtaattatt 622  Q
    ||||||||||||| |||||||  |||||||||||||| |||||||||||||||||||    
T  33827942 ggtattggttaag-aaccaaataaaataactttttattaaaaagtaatgtaattatt 33827887  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 622
Target Start/End: Original strand, 33840023 - 33840078
Alignment:
Q  567 ggtattggttaagcaaccaaaacaaataactttttat-aaaaagtaatgtaattatt 622  Q
    ||||||||||||| |||||||  |||||||||||||| |||||||||||||||||||    
T  33840023 ggtattggttaag-aaccaaataaaataactttttattaaaaagtaatgtaattatt 33840078  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 623
Target Start/End: Complemental strand, 34382747 - 34382694
Alignment:
Q  570 attggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattattg 623  Q
    ||||||| | ||| |||||||| ||||||||||||||||||  |||||||||||    
T  34382747 attggtttaacaatcaaaacaagtaactttttataaaaagttgtgtaattattg 34382694  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 622
Target Start/End: Complemental strand, 26855968 - 26855889
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttataaaaagtaatgtaattatt 622  Q
    |||||||||||| | |||||  | ||| |||||||||||| |||||  || ||| ||||||| ||||||||||||||||||    
T  26855968 ggagaatgttaaccggtgcctccggggcattggttaagca-ccaaataaagtaaatttttattaaaagtaatgtaattatt 26855889  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 543 - 579
Target Start/End: Complemental strand, 38014242 - 38014206
Alignment:
Q  543 gagaatgttaaacagtgccctcagggtattggttaag 579  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  38014242 gagaatgctaaacagtgccctcagggcattggttaag 38014206  T

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Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 542 - 603
Target Start/End: Complemental strand, 83022 - 82962
Alignment:
Q  542 ggagaatgttaaacagtgccctcagggtattggttaagcaaccaaaacaaataactttttat 603  Q
    ||||||||||||||||||||||||||  ||||||||| ||| |||||||| |||||||||||    
T  83022 ggagaatgttaaacagtgccctcaggacattggttaa-caatcaaaacaagtaactttttat 82962  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 622
Target Start/End: Original strand, 17532 - 17585
Alignment:
Q  570 attggttaagcaaccaaaacaaataac-tttttataaaaagtaatgtaattatt 622  Q
    ||||||||| ||| ||||||||||||| ||||||| ||||||||| ||||||||    
T  17532 attggttaaacaatcaaaacaaataacttttttattaaaagtaatataattatt 17585  T

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