View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17854_low_4 (Length: 448)
Name: NF17854_low_4
Description: NF17854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17854_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 53719961 - 53720390
Alignment:
| Q |
1 |
attttattaaaatcaacatataaattttaaaattaatatattcaatatcaataacatgatcatatcatttaagactaaaattagaaattgcaggcccagg |
100 |
Q |
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| T |
53719961 |
attttattacaatcaacatataaattttaaaattaatatattcaatatcaataacatgatcatatcatttaagactaaaattagaaattgcaggcccagg |
53720060 |
T |
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| Q |
101 |
cgtgagttgcctaagaggatgatcggattaataagtgggcagaggaggggttatagaaaac-aggggggaacggcaggcacaaagatacggtcgaggagg |
199 |
Q |
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| T |
53720061 |
cgtgagttgcctaagaggatgatcggattaataagtgggcagaggaggggttatagaaaaccaggggggaacggcaggcacaaagatacggtcgaggagg |
53720160 |
T |
|
| Q |
200 |
gggtccaaggaaacccaattaaggattaggccaatgaaggtggcccaaagagcggggtggtggcgaggaaacaaacgtgtacccaagtttttggtgtcta |
299 |
Q |
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| T |
53720161 |
gggtccaaggaaacccaattaaggattaggccaatgaaggtggcccaaagagtggggtgttggcgaggaaacaaacgtgtacccaagtttttggtgtcta |
53720260 |
T |
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| Q |
300 |
ctcttttttgtgtcaaatgcaaagagtatagcaacgaaactcacacgcattaagtgtgcaaaagtattttaggttaggatgtgcggcgcctcaatgtatc |
399 |
Q |
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| T |
53720261 |
ctcttttttgtttcaaatgcaaagagtatagcaacgaaactcacacgcattaagtgtgcaaaagtattctaggttaggatgtgcggtgcctcaatgtatc |
53720360 |
T |
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| Q |
400 |
aaatgtttaggcaacctcttgcgatctaaa |
429 |
Q |
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| T |
53720361 |
aaatgtttaggcaacctcttacgatctaaa |
53720390 |
T |
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