View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17854_low_5 (Length: 433)

Name: NF17854_low_5
Description: NF17854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17854_low_5
NF17854_low_5
[»] chr4 (4 HSPs)
chr4 (16-426)||(24622244-24622654)
chr4 (46-126)||(17679996-17680071)
chr4 (46-124)||(9438493-9438569)
chr4 (46-126)||(36083891-36083974)
[»] chr5 (3 HSPs)
chr5 (167-302)||(12079565-12079697)
chr5 (20-126)||(12089405-12089509)
chr5 (19-99)||(28752752-28752832)
[»] chr2 (2 HSPs)
chr2 (167-302)||(43675233-43675365)
chr2 (52-109)||(28839553-28839610)
[»] chr7 (2 HSPs)
chr7 (20-72)||(1830751-1830803)
chr7 (32-72)||(1830276-1830316)
[»] chr1 (1 HSPs)
chr1 (46-125)||(11910444-11910525)
[»] chr6 (3 HSPs)
chr6 (65-126)||(9229884-9229945)
chr6 (21-80)||(13480050-13480109)
chr6 (88-126)||(1332944-1332982)
[»] chr3 (6 HSPs)
chr3 (314-350)||(17797251-17797287)
chr3 (314-350)||(19105691-19105727)
chr3 (19-84)||(17796141-17796207)
chr3 (19-84)||(19104581-19104647)
chr3 (238-302)||(17797024-17797088)
chr3 (238-302)||(19105464-19105528)
[»] scaffold0655 (1 HSPs)
scaffold0655 (46-99)||(1926-1979)


Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 24622244 - 24622654
Alignment:
Q  16 atggatgtgtagaacagaagaatatttaggaattgcactcatcatacaacataataaaattaaaagaaagatatgtctctttatggttgaaccttcaata 115  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24622244 atggatgtgtagaacagaagaatatttatgaattgcactcatcatacaacataataaaattaaaagaaagatatgtctctttatggttgaaccttcaata 24622343  T
Q  116 cccaattgctagccataactccctataattcctatttataaagatttccatccttatgccacatgttcatcttccaaatatgaaggatgtgtcggaaaac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24622344 cccaattgctagccataactccctataattcctatttataaagatttccatccttatgccacatgttcatcttccaaatataaaggatgtgtcggaaaac 24622443  T
Q  216 gagcatgaacctcctctgccaacatcttcagtaagctgctaatccatatttcgattcggcacatgcaagaaataatcaacatagatccacaaatgactca 315  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24622444 gagcatgaacctcctctaccaacatcttcagtaagctgctaatccatatttcgattcggcacatgcaagaaataatcaacatagatccacaaatgactca 24622543  T
Q  316 tcttatcaatttcctaattgtacaatagcaaacctttaatgaaagnnnnnnnncgaataagttgcaatgagaaagtgacttcataacgtgcagcaaacct 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||    
T  24622544 tcttatcaatttcctaattgtacaatagcaaacctttaatgaaaggaaaaaaacgaataatttgcaatgagaaagtgacttcataacgtgcagcaaacct 24622643  T
Q  416 gtgacatgcaa 426  Q
    |||||||||||    
T  24622644 gtgacatgcaa 24622654  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 17680071 - 17679996
Alignment:
Q  46 aattgcactcatcatacaacataataaaattaaaagaaagatatgtctctttatggttgaaccttcaatacccaattgcta 126  Q
    |||||||||||||||     ||||||||||||||||||| | | |||||||||| ||||||||||||||||||||||||||    
T  17680071 aattgcactcatcat-----ataataaaattaaaagaaacacaagtctctttatagttgaaccttcaatacccaattgcta 17679996  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 9438493 - 9438569
Alignment:
Q  46 aattgcactcatcatacaacataataaaattaaaagaaagatatgtctctttatggttgaaccttcaatacccaattgc 124  Q
    ||||||||||||||||||||| ||||||||||||||||  | | | ||||| || ||||||||| |||||| |||||||    
T  9438493 aattgcactcatcatacaacaaaataaaattaaaagaa--acacgactcttcatagttgaacctccaatactcaattgc 9438569  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 36083891 - 36083974
Alignment:
Q  46 aattgcactcatcatacaacataataaaattaaaagaa--agatatgtctctttatggttgaaccttcaa-tacccaattgcta 126  Q
    ||||||||| |||| |||||||| ||| ||||||||||  | | |||||||||||| ||||||||| ||| |||||||||||||    
T  36083891 aattgcacttatcaaacaacatactaagattaaaagaaccacacatgtctctttatagttgaacctccaattacccaattgcta 36083974  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 167 - 302
Target Start/End: Original strand, 12079565 - 12079697
Alignment:
Q  167 ccttatgccacatgttcatcttccaaatatgaaggatgtgtcggaaaacgagcatgaacctcctctgccaacatcttcagtaagctgctaatccatattt 266  Q
    ||||||||| ||||||  |  ||||||||| ||| ||||||||||||| |||||||||||| ||   |||||||||||| |||| |||||||||| ||||    
T  12079565 ccttatgcctcatgtttgttctccaaatataaag-atgtgtcggaaaaggagcatgaacctgcta--ccaacatcttcaataagttgctaatccaaattt 12079661  T
Q  267 cgattcggcacatgcaagaaataatcaacatagatc 302  Q
     |||||||||||||||  |||||||| |||||||||    
T  12079662 ggattcggcacatgcagaaaataatcgacatagatc 12079697  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 12089405 - 12089509
Alignment:
Q  20 atgtgtagaacagaagaatatttaggaattgcactcatcatacaacataataaaattaaaagaaagatatgtctctttatggttgaaccttcaataccca 119  Q
    |||||| ||||| |||||| ||||  |||| |||||||||||||||||||||||||||||||||  | | |||| ||||| ||||||||| ||||| |||    
T  12089405 atgtgtggaacaaaagaatgtttaacaattacactcatcatacaacataataaaattaaaagaa--acacgtctttttatagttgaacctccaatatcca 12089502  T
Q  120 attgcta 126  Q
    |||||||    
T  12089503 attgcta 12089509  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 28752752 - 28752832
Alignment:
Q  19 gatgtgtagaacagaagaatatttaggaattgcactcatcatacaacataataaaattaaaagaaagatatgtctctttat 99  Q
    |||||||||| || |||||| ||||  || | |||||||||||||||| || |||||| ||||||| | ||||||||||||    
T  28752752 gatgtgtagatcataagaatgtttaacaactacactcatcatacaacacaaaaaaatttaaagaaacacatgtctctttat 28752832  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 302
Target Start/End: Complemental strand, 43675365 - 43675233
Alignment:
Q  167 ccttatgccacatgttcatcttccaaatatgaaggatgtgtcggaaaacgagcatgaacctcctctgccaacatcttcagtaagctgctaatccatattt 266  Q
    |||||||||||||||||||  ||||| ||| ||| |||||| | |||| || ||||||||||||  |  | |||||||| ||||||||||||||| ||||    
T  43675365 ccttatgccacatgttcattctccaattataaag-atgtgtagcaaaaggaacatgaacctccttcg--agcatcttcaataagctgctaatccaaattt 43675269  T
Q  267 cgattcggcacatgcaagaaataatcaacatagatc 302  Q
    ||||| || ||||||| ||||||||  |||||||||    
T  43675268 cgatttgggacatgcaggaaataattgacatagatc 43675233  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 28839610 - 28839553
Alignment:
Q  52 actcatcatacaacataataaaattaaaagaaagatatgtctctttatggttgaacct 109  Q
    |||||| ||||||||||||||||||||||||||   |||||||||||| |||||||||    
T  28839610 actcattatacaacataataaaattaaaagaaattcatgtctctttatagttgaacct 28839553  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 1830803 - 1830751
Alignment:
Q  20 atgtgtagaacagaagaatatttaggaattgcactcatcatacaacataataa 72  Q
    |||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  1830803 atgtgtagaatagaagaatgtttaacaattgcactcatcatacaacataataa 1830751  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 1830316 - 1830276
Alignment:
Q  32 gaagaatatttaggaattgcactcatcatacaacataataa 72  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  1830316 gaagaatgtttaacaattgcactcatcatacaacataataa 1830276  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 11910444 - 11910525
Alignment:
Q  46 aattgcactcatcatacaacataataaaattaaaagaaagata--tgtctctttatggttgaaccttcaatacccaattgct 125  Q
    ||||||||| |||| |||||||| ||| | ||||||||| | |  ||||||||||| ||||||||| |||||||||||||||    
T  11910444 aattgcacttatcaaacaacatactaagagtaaaagaaacacacatgtctctttatagttgaacctccaatacccaattgct 11910525  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 9229884 - 9229945
Alignment:
Q  65 cataataaaattaaaagaaagatatgtctctttatggttgaaccttcaatacccaattgcta 126  Q
    |||| ||| ||||||||||| | | |||||||||| ||||||||| ||||||||||||||||    
T  9229884 catactaagattaaaagaaacacacgtctctttatagttgaacctccaatacccaattgcta 9229945  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 13480109 - 13480050
Alignment:
Q  21 tgtgtagaacagaagaatatttaggaattgcactcatcatacaacataataaaattaaaa 80  Q
    ||||||||||| |||||| ||||  ||||||||||||||||||||||  ||| |||||||    
T  13480109 tgtgtagaacaaaagaatgtttaacaattgcactcatcatacaacattttaagattaaaa 13480050  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 1332982 - 1332944
Alignment:
Q  88 atgtctctttatggttgaaccttcaatacccaattgcta 126  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  1332982 atgtctctttatagttgaacctccaatacccaattgcta 1332944  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 17797251 - 17797287
Alignment:
Q  314 catcttatcaatttcctaattgtacaatagcaaacct 350  Q
    |||||||||||||||||| ||||||||||||||||||    
T  17797251 catcttatcaatttcctagttgtacaatagcaaacct 17797287  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 19105691 - 19105727
Alignment:
Q  314 catcttatcaatttcctaattgtacaatagcaaacct 350  Q
    |||||||||||||||||| ||||||||||||||||||    
T  19105691 catcttatcaatttcctagttgtacaatagcaaacct 19105727  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 17796141 - 17796207
Alignment:
Q  19 gatgtgtagaacagaagaata-tttaggaattgcactcatcatacaacataataaaattaaaagaaa 84  Q
    ||||| ||||| ||||||||| ||||  |||| || |||||||||||||||||||||||||| ||||    
T  17796141 gatgtatagaatagaagaatagtttaacaattacattcatcatacaacataataaaattaaatgaaa 17796207  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 19104581 - 19104647
Alignment:
Q  19 gatgtgtagaacagaagaata-tttaggaattgcactcatcatacaacataataaaattaaaagaaa 84  Q
    ||||| ||||| ||||||||| ||||  |||| || |||||||||||||||||||||||||| ||||    
T  19104581 gatgtatagaatagaagaatagtttaacaattacattcatcatacaacataataaaattaaatgaaa 19104647  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 17797024 - 17797088
Alignment:
Q  238 catcttcagtaagctgctaatccatatttcgattcggcacatgcaagaaataatcaacatagatc 302  Q
    |||||||||||||||| ||||||| ||||  ||||  || ||||| ||||||||| |||||||||    
T  17797024 catcttcagtaagctggtaatccaaatttttattcaacatatgcaggaaataatcgacatagatc 17797088  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 19105464 - 19105528
Alignment:
Q  238 catcttcagtaagctgctaatccatatttcgattcggcacatgcaagaaataatcaacatagatc 302  Q
    |||||||||||||||| ||||||| ||||  ||||  || ||||| ||||||||| |||||||||    
T  19105464 catcttcagtaagctggtaatccaaatttttattcaacatatgcaggaaataatcgacatagatc 19105528  T

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Target: scaffold0655 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 1926 - 1979
Alignment:
Q  46 aattgcactcatcatacaacataataaaattaaaagaaagatatgtctctttat 99  Q
    ||||||||| |||| ||| || ||||||||||||||||| | ||||||||||||    
T  1926 aattgcactaatcaaacatcaaaataaaattaaaagaaacacatgtctctttat 1979  T

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