View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17854_low_7 (Length: 382)

Name: NF17854_low_7
Description: NF17854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17854_low_7
NF17854_low_7
[»] chr5 (9 HSPs)
chr5 (11-172)||(16801063-16801224)
chr5 (237-382)||(16801289-16801432)
chr5 (66-172)||(31913910-31914018)
chr5 (66-170)||(31561447-31561553)
chr5 (66-170)||(36180038-36180145)
chr5 (102-170)||(4840959-4841028)
chr5 (245-305)||(7124234-7124294)
chr5 (66-150)||(16497404-16497491)
chr5 (73-170)||(29716356-29716455)
[»] chr7 (3 HSPs)
chr7 (66-169)||(1253984-1254089)
chr7 (245-301)||(37391899-37391955)
chr7 (66-172)||(6268969-6269076)
[»] chr2 (4 HSPs)
chr2 (67-170)||(37654850-37654955)
chr2 (66-172)||(28546222-28546330)
chr2 (66-168)||(37810365-37810469)
chr2 (122-170)||(43304729-43304777)
[»] chr8 (2 HSPs)
chr8 (66-152)||(4870637-4870725)
chr8 (66-172)||(33177340-33177445)
[»] chr4 (4 HSPs)
chr4 (66-172)||(40317131-40317238)
chr4 (66-172)||(40327205-40327312)
chr4 (245-305)||(8084885-8084945)
chr4 (273-305)||(50517844-50517876)
[»] chr1 (1 HSPs)
chr1 (121-170)||(2292726-2292775)
[»] chr6 (1 HSPs)
chr6 (89-172)||(21010384-21010469)
[»] chr3 (3 HSPs)
chr3 (243-305)||(43173614-43173676)
chr3 (103-172)||(9030557-9030626)
chr3 (102-170)||(27162895-27162963)
[»] scaffold0037 (1 HSPs)
scaffold0037 (273-305)||(36908-36940)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 16801063 - 16801224
Alignment:
Q  11 aaattattctgacgttgaagattatgacgcatgttagaatcttaaaaaacttatgaagttaattttatattttgttgttaagttgaccataactttattt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  16801063 aaattattctgacgttgaagattatgacgcatgttagaatcttaaaaaacttatgaagttaattttgtattttgttgttaagttgaccataattttattt 16801162  T
Q  111 tggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattgacctatttgc 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16801163 tggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattgacctatttgc 16801224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 237 - 382
Target Start/End: Original strand, 16801289 - 16801432
Alignment:
Q  237 cacttgtacgagttcacgattcgagtgtagataaataaaatgagtcgaggtaaactttcgagttgcaaaccnnnnnnnagagtctcgattttgaaaggca 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        ||||||||||||||||||||||    
T  16801289 cacttgtacgagttcacgattcgagtgtagataaataaaatgagtcgaggtacactttcgagttgcaaac--ttttttagagtctcgattttgaaaggca 16801386  T
Q  337 gcccaaaatatgcatatttgcaaccaattgctaataaagtcaaaat 382  Q
     |||||||||||||||||||||||||||||||||||||||||||||    
T  16801387 acccaaaatatgcatatttgcaaccaattgctaataaagtcaaaat 16801432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 31913910 - 31914018
Alignment:
Q  66 aagttaattttatattttgttgttaagttgaccataact--ttattttggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattga 163  Q
    ||||||||||| ||||||| || |||||| | |||||||  ||||| ||||||| ||||||||||||  ||||||||||| |||||||| ||| ||||||    
T  31913910 aagttaattttgtattttgatgctaagttaaacataactctttattatggtggttatgtatactttgtctttataattaagtcatattttgcactattga 31914009  T
Q  164 cctatttgc 172  Q
    | |||||||    
T  31914010 cttatttgc 31914018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 31561553 - 31561447
Alignment:
Q  66 aagttaattttatattttgttgttaagttgaccataact--ttattttggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattga 163  Q
    ||||||||||| || |||| |||||||||||  | ||||  ||||| |||| || ||||||||||||  ||||||||||| |||||||| | | ||||||    
T  31561553 aagttaattttgtaatttgatgttaagttgaagacaactctttattatggtagttatgtatactttgtctttataattaagtcatattttgtattattga 31561454  T
Q  164 cctattt 170  Q
    |||||||    
T  31561453 cctattt 31561447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 36180038 - 36180145
Alignment:
Q  66 aagttaattttatattttgttgttaagttgaccataac--tttattttggtggtcatgtatactttgcattt-ataattaaatcatatttcgcaatattg 162  Q
    ||||||||||| ||| ||| || |||||||| ||||||  |||||| | ||| ||| ||||||||||| ||| |||||||| |||||||| ||| |||||    
T  36180038 aagttaattttgtatcttgatgctaagttgagcataacgctttattatagtgatcaggtatactttgccttttataattaagtcatattttgcactattg 36180137  T
Q  163 acctattt 170  Q
    || |||||    
T  36180138 acatattt 36180145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 4841028 - 4840959
Alignment:
Q  102 actttattttggtggtcatgtatactttgcattt-ataattaaatcatatttcgcaatattgacctattt 170  Q
    |||||||| | || || ||||||||||||| ||| |||||||| |||||||| ||| |||||||||||||    
T  4841028 actttattattgtagttatgtatactttgccttttataattaagtcatattttgcactattgacctattt 4840959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 7124294 - 7124234
Alignment:
Q  245 cgagttcacgattcgagtgtagataaataaaatgagtcgaggtaaactttcgagttgcaaa 305  Q
    |||||| ||||||||||| ||  ||  ||||| |||| |||||||||||||||||||||||    
T  7124294 cgagtttacgattcgagtttacctaggtaaaacgagttgaggtaaactttcgagttgcaaa 7124234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 16497491 - 16497404
Alignment:
Q  66 aagttaattttatattttgttgttaagttgaccataa--ctttattttggtgg-tcatgtatactttgcatttataattaaatcatat 150  Q
    ||||||||||| ||||||| || |||||||| |||||  ||||||| || ||| | ||||||||||||  ||||||||||| ||||||    
T  16497491 aagttaattttgtattttgatgctaagttgaacataactctttattatgatggtttatgtatactttgtctttataattaagtcatat 16497404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 29716455 - 29716356
Alignment:
Q  73 ttttatattttgttgttaagttgaccataac--tttattttggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattgacctattt 170  Q
    |||||||||||| || |||||||| ||||||  |||||| |||| ||   ||||| ||||| ||| ||||||| |||||||| ||| ||||||| |||||    
T  29716455 ttttatattttgatgctaagttgagcataacattttattatggtagtttggtataatttgcctttgtaattaagtcatattttgcactattgacatattt 29716356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 1254089 - 1253984
Alignment:
Q  66 aagttaattttatattttgttgttaagttgaccataact--ttattttggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattga 163  Q
    ||||| ||||||||||||  || |||||||| |||||||  ||| | ||||||| ||||||||||||  ||||||||||| |||||||| ||| ||||||    
T  1254089 aagttcattttatatttttgtgctaagttgaacataactctttaatatggtggttatgtatactttgtctttataattaagtcatattttgcactattga 1253990  T
Q  164 cctatt 169  Q
    ||||||    
T  1253989 cctatt 1253984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 37391955 - 37391899
Alignment:
Q  245 cgagttcacgattcgagtgtagataaataaaatgagtcgaggtaaactttcgagttg 301  Q
    |||||| ||||||||||| || ||||||||||||||| |||||||||| ||||||||    
T  37391955 cgagtttacgattcgagtttacataaataaaatgagttgaggtaaactctcgagttg 37391899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 6268969 - 6269076
Alignment:
Q  66 aagttaattttatattttgttgttaagttgaccataact--ttattttggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattga 163  Q
    ||||||||||| ||||||| || ||||||||  ||||||  ||||| || |||| | |||||| |||  ||||||||||| |||||||| ||| ||||||    
T  6268969 aagttaattttgtattttgatgctaagttgaaaataactatttattatgatggtta-gtatacattgtctttataattaagtcatattttgcactattga 6269067  T
Q  164 cctatttgc 172  Q
    |||||||||    
T  6269068 cctatttgc 6269076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 37654955 - 37654850
Alignment:
Q  67 agttaattttatattttgttgttaagttgaccataac--tttattttggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattgac 164  Q
    |||||||||| ||||||| ||||||||||| |||||   |||||  |||||||   ||||||||||||||||||||||| |||||||| | | ||||||     
T  37654955 agttaattttgtattttgatgttaagttgagcataatattttataatggtggtttggtatactttgcatttataattaagtcatattttgtactattgaa 37654856  T
Q  165 ctattt 170  Q
    ||||||    
T  37654855 ctattt 37654850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 28546222 - 28546330
Alignment:
Q  66 aagttaattttatattttgttgttaagttgaccataact--ttattttggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattga 163  Q
    ||||||||||| ||||||| || |||||||| |||||||  |||||  |||||| ||||||  ||||| |||| |||||| ||||||||  || ||||||    
T  28546222 aagttaattttgtattttgatgctaagttgaacataactctttattaaggtggttatgtatgttttgcctttagaattaagtcatattttacattattga 28546321  T
Q  164 cctatttgc 172  Q
    |||||||||    
T  28546322 cctatttgc 28546330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 37810469 - 37810365
Alignment:
Q  66 aagttaattttatattttgttgttaagttgaccataa--ctttattttggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattga 163  Q
    ||||||||||| ||||||| ||||||||||| | |||  |||||||  || ||| |||||||| |||  ||||||||||| ||||||||  |||||||||    
T  37810469 aagttaattttgtattttgatgttaagttgaacgtaattctttattacgggggttatgtatacgttgtctttataattaagtcatattttacaatattga 37810370  T
Q  164 cctat 168  Q
    |||||    
T  37810369 cctat 37810365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 43304777 - 43304729
Alignment:
Q  122 tatactttgcatttataattaaatcatatttcgcaatattgacctattt 170  Q
    |||||||||||||||||||||| |||||||| ||| | |||| ||||||    
T  43304777 tatactttgcatttataattaagtcatattttgcactgttgatctattt 43304729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 4870725 - 4870637
Alignment:
Q  66 aagttaattttatattttgttgttaagttgaccataact--ttattttggtggtcatgtatactttgcatttataattaaatcatattt 152  Q
    ||||||||||| ||||||| |||||| |||| ||| |||  ||||| ||||||| ||||||||||||  ||||||||||  ||||||||    
T  4870725 aagttaattttctattttgatgttaaattgaacattactctttattatggtggttatgtatactttgtctttataattatgtcatattt 4870637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 172
Target Start/End: Complemental strand, 33177445 - 33177340
Alignment:
Q  66 aagttaattttatattttgttgttaagttgaccataactttattttggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattgacc 165  Q
    ||||||||||| ||||||| || |||||||| ||||||| | || |||| || ||||||| ||||  ||||||||||| || ||||| | |  |||||||    
T  33177445 aagttaattttgtattttgatgctaagttgaacataactct-ttatggtagttatgtatattttgtctttataattaagtcttattttgtatcattgacc 33177347  T
Q  166 tatttgc 172  Q
    |||||||    
T  33177346 tatttgc 33177340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 172
Target Start/End: Complemental strand, 40317238 - 40317131
Alignment:
Q  66 aagttaattttatattttgttgttaagttgaccataact--ttattttggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattga 163  Q
    ||||||||||| ||||||| |  |||||||| |||||||  ||||| | ||||| |||||| |||||  ||||||||||| | |||||| ||| ||||||    
T  40317238 aagttaattttgtattttgattctaagttgaacataactatttattatagtggttatgtatgctttgt-tttataattaagttatattttgcactattga 40317140  T
Q  164 cctatttgc 172  Q
    |||||||||    
T  40317139 cctatttgc 40317131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 172
Target Start/End: Complemental strand, 40327312 - 40327205
Alignment:
Q  66 aagttaattttatattttgttgttaagttgaccataact--ttattttggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattga 163  Q
    ||||||||||| ||||||| |  |||||||| |||||||  ||||| | ||||| |||||| |||||  ||||||||||| | |||||| ||| ||||||    
T  40327312 aagttaattttgtattttgattctaagttgaacataactatttattatagtggttatgtatgctttgt-tttataattaagttatattttgcactattga 40327214  T
Q  164 cctatttgc 172  Q
    |||||||||    
T  40327213 cctatttgc 40327205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 8084885 - 8084945
Alignment:
Q  245 cgagttcacgattcgagtgtagataaataaaatgagtcgaggtaaactttcgagttgcaaa 305  Q
    |||||| |||| |||||| ||  ||||||||| |||| |||||||||| ||||||||||||    
T  8084885 cgagtttacgagtcgagtttacctaaataaaacgagttgaggtaaactctcgagttgcaaa 8084945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 305
Target Start/End: Original strand, 50517844 - 50517876
Alignment:
Q  273 aaaatgagtcgaggtaaactttcgagttgcaaa 305  Q
    ||||||||| |||||||||||||||||||||||    
T  50517844 aaaatgagttgaggtaaactttcgagttgcaaa 50517876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 2292775 - 2292726
Alignment:
Q  121 gtatactttgcatttataattaaatcatatttcgcaatattgacctattt 170  Q
    ||||| ||||||||| ||||||| |||||||| |||||||||||||||||    
T  2292775 gtatagtttgcatttgtaattaagtcatattttgcaatattgacctattt 2292726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 21010469 - 21010384
Alignment:
Q  89 taagttgaccataact--ttattttggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattgacctatttgc 172  Q
    |||||||| |||||||  ||||| |||| || ||||||||||||   |||||||||| |||||||| ||| |||||| ||||||||    
T  21010469 taagttgaacataactctttattatggtagttatgtatactttgtcattataattaagtcatattttgcactattgatctatttgc 21010384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 43173614 - 43173676
Alignment:
Q  243 tacgagttcacgattcgagtgtagataaataaaatgagtcgaggtaaactttcgagttgcaaa 305  Q
    ||||||||| ||| |||||| ||  ||||||||| |||| |||||||||| ||||||||||||    
T  43173614 tacgagttctcgagtcgagtttacctaaataaaacgagttgaggtaaactctcgagttgcaaa 43173676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 9030626 - 9030557
Alignment:
Q  103 ctttattttggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattgacctatttgc 172  Q
    ||||||| ||||||| ||||||||||||  ||| ||||||| |||||||| | | ||||||| |||||||    
T  9030626 ctttattatggtggttatgtatactttgtctttgtaattaagtcatattttgaattattgacatatttgc 9030557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 27162895 - 27162963
Alignment:
Q  102 actttattttggtggtcatgtatactttgcatttataattaaatcatatttcgcaatattgacctattt 170  Q
    |||||||| |||||||   ||||||||||  ||||||||||| | |||||| ||| |||||||||||||    
T  27162895 actttattatggtggttgggtatactttgtctttataattaagttatattttgcactattgacctattt 27162963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 305
Target Start/End: Complemental strand, 36940 - 36908
Alignment:
Q  273 aaaatgagtcgaggtaaactttcgagttgcaaa 305  Q
    ||||||||| |||||||||||||||||||||||    
T  36940 aaaatgagttgaggtaaactttcgagttgcaaa 36908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University