View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17855_high_1 (Length: 761)
Name: NF17855_high_1
Description: NF17855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17855_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 81 - 390
Target Start/End: Original strand, 40648624 - 40648933
Alignment:
| Q |
81 |
tgacaagagctctgcagctgcaacaaaagctacgggtttaacgggtattgatcatgctaccatgaaacaaaaggtacgatttgaattaaatgaactactc |
180 |
Q |
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| T |
40648624 |
tgacaagagctctgcagctgcaacaaaagctacgggttttacgggtattgatcatgctaccatgaaacaaaaggtacgatttgaattaaatgaactcctc |
40648723 |
T |
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| Q |
181 |
attagttcattatcatcacaggatctaggagattttatttcgtataaaatatcaagggatcaattgtgatgtgcaattttacttcgagtacttggtggtt |
280 |
Q |
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| T |
40648724 |
attagttcattatcatcacaggatctaggagattttatttcgtataaaatatcaagggatcaattgtgatgtgcaattttacttcgagtacttggtggtt |
40648823 |
T |
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| Q |
281 |
agatgtattgttcataaacacacacatatatctaaaacatgtcgcatagttgtatatttgtaactcttacttcaatgaaactnnnnnnnggctttcagat |
380 |
Q |
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| T |
40648824 |
agatgtattgttcataaacacacacatatatctaaaacatgtcgcatagttgtatatttgtaactcttacttcaatgaaactaaaaaaaggctttcagat |
40648923 |
T |
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| Q |
381 |
ttataaccaa |
390 |
Q |
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|||||||||| |
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| T |
40648924 |
ttataaccaa |
40648933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 460 - 744
Target Start/End: Original strand, 40649050 - 40649333
Alignment:
| Q |
460 |
ttctagatttcttttgtgcaatggagaaaattcttactacatacttgtagaaatttaggaattgaaatcaattttaaatagagcatcagacagagcttct |
559 |
Q |
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| T |
40649050 |
ttctagatttcttttgtgcaatggagaaaattcttactacatacttgtagaaatttaggaattgaaatcaattttaaatagagcatcagacatagctttt |
40649149 |
T |
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| Q |
560 |
actgtttatggacaaatggaagagttttggtacaatatttgttttcttaactaatgagttagtgattatttttgttaatcaaatcattatttgtgtaaac |
659 |
Q |
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| T |
40649150 |
actgtttatggacaaatggaagagttttggtacaatatttgttttcttaactaatgagttagtgattatttttgttaatcaaatcattatttgtgtaaac |
40649249 |
T |
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| Q |
660 |
tcttatatactttaagaaaaatcatttcttattaaaaaccatcattcattgtctatgcattaaactaattttctatatctttggt |
744 |
Q |
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| T |
40649250 |
tcttatatactttaagaaaaatcatttcttatt-gaaaccatcattcattgtctatacattaaactaattttctatatctttggt |
40649333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 40648519 - 40648593
Alignment:
| Q |
9 |
agaagcataggatacagaaatttatgagatcgattatagaggtcctgagactcactcgtttgtgcctccacctga |
83 |
Q |
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| T |
40648519 |
agaagcattggatacagaaatttatgagatcgattatagaggtcctgagactcactcgtttgtgcctccacctga |
40648593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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