View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17855_high_17 (Length: 266)
Name: NF17855_high_17
Description: NF17855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17855_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 11026432 - 11026193
Alignment:
| Q |
12 |
atgaataattacgaaagacgtaaagatagtactggtaataatttcacaagtaatgaaggtgaatgtcattgaaactcgttatgatgtagttgcacaaaat |
111 |
Q |
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| T |
11026432 |
atgaataattacgaaagacgtaaagatagtactggtaataatttcacaagtaatgaaggtgaatgtcattgaaactcgttatgatgtagttgcacaaaat |
11026333 |
T |
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| Q |
112 |
catgtgggt-ttacttaaaccttaaataaatcaatctgcatggtgcaaataaaacccgacgattccatgtactagacaacagtgaaattgaagaagaaaa |
210 |
Q |
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| T |
11026332 |
catatgtgtgttacttaaaccttaaataaatcaatctgcatggtgcaaataaaacccgacgattccatgtactagacaacagtgaaattgaagaagaaaa |
11026233 |
T |
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| Q |
211 |
tttactgttatgttaaggcaaaaagtaaaatccgttgatt |
250 |
Q |
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| T |
11026232 |
ttaactgttatgttaaggcaaaaagtaaaatccgttgatt |
11026193 |
T |
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