View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17855_high_4 (Length: 574)
Name: NF17855_high_4
Description: NF17855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17855_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 555
Target Start/End: Complemental strand, 7159040 - 7158464
Alignment:
| Q |
10 |
aagaatatatttacaaatacactaatgggcttatgggttcaatacttagaactccaacgctcccctcaagctggaacaataaagattatatgcattgagg |
109 |
Q |
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| T |
7159040 |
aagaatatatttacaaatacactaatgggcttatgggttcaatacttagaactccaacagtcccctcaagctggaacaataaagattatatgcattgagg |
7158941 |
T |
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| Q |
110 |
ttgttacaaacaatctcaatctcactggt-------ctcnnnnnnn--gcatgtattcgacattctcaagggaactggcatgttagactgtaaaattgct |
200 |
Q |
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| T |
7158940 |
ttgttacaaataatctcaatctcactggtgttgtttctcaaaaaaaaagcatgtatccgacattctcaagggaactggcatgttagactgtaaaattgct |
7158841 |
T |
|
| Q |
201 |
gactcttccatgaactcctccctggaaaggaggcccatttactgatccaagcgggtgccaaaaccttgtcagaaagctaaattatatcacta-------- |
292 |
Q |
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| T |
7158840 |
gactcttccatgaactcctccctggacaggaggcccatttactgatccaagagggtgccaaagccttgttagtaagctaaattatatcactaattcacta |
7158741 |
T |
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| Q |
293 |
tcatctgttcagagatttcatttgttgtttcaatgttgagtcattcccttcattctccttgtgattgtctaatagggacttggttactatcggatgccta |
392 |
Q |
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| T |
7158740 |
tcatctgttcagagatttcatttgttgtttcaatgttgagtcattcccttcattctccttgtgattgtctaatagggacttggttactatcggatgccta |
7158641 |
T |
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| Q |
393 |
agccctacatcgagtagtataaaatgtttggtggagtatttaagtggctcgatgtagtatttaagatattgaagcgtttgc-----------tattttat |
481 |
Q |
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| T |
7158640 |
aggcctgcatcgagtagtataaaatgtttggtggagtatttaagtggctcgatgtagtatttaagatattgaagcttttgctgagaaagttgtattttat |
7158541 |
T |
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| Q |
482 |
gcggccactagagatacagattgt---nnnnnnnnntgcaatatggatttggcatccaaagtgagggtctctgagaa |
555 |
Q |
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| T |
7158540 |
gcggccactagagatacagattgtaaaaaaaaaaaatgcaatatggatttggcatccaaagtgagggtctctgagaa |
7158464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 35067462 - 35067422
Alignment:
| Q |
399 |
acatcgagtagtataaaatgtttggtggagtatttaagtgg |
439 |
Q |
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| T |
35067462 |
acatcgagtagtataggatgtttggtggagtatttaagtgg |
35067422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 441
Target Start/End: Original strand, 37483092 - 37483169
Alignment:
| Q |
364 |
atagggacttggttactatcggatgcctaagccctacatcgagtagtataaaatgtttggtggagtatttaagtggct |
441 |
Q |
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| T |
37483092 |
atagggacttgggtattatggggtgcccaagttccacatcaagtagtatgggatgtttggtggagtatttaagtggct |
37483169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 434
Target Start/End: Complemental strand, 28489178 - 28489108
Alignment:
| Q |
364 |
atagggacttggttactatcggatgcctaagccctacatcgagtagtataaaatgtttggtggagtattta |
434 |
Q |
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| T |
28489178 |
atagggacttggatattatgggatgtctaagtcctacatcaagtagtatgagatgtttggttgaatattta |
28489108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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