View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17855_low_11 (Length: 392)
Name: NF17855_low_11
Description: NF17855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17855_low_11 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 3 - 392
Target Start/End: Original strand, 45653043 - 45653428
Alignment:
| Q |
3 |
ataggccctatgtcctttgcttgtccaatattcaaatcttttttgtagctacaagacctaatattaaaccgattaggcagttgtaatagcgagtacctca |
102 |
Q |
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| T |
45653043 |
ataggccctatgtcctttgcttgtccaatattcaaatcttttttgtagctacaagacctaatattaaaccgattaggcagttgtaatagcgagtacctca |
45653142 |
T |
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| Q |
103 |
ctattatagtgttaagtattttcaataagtgattaacaaattaagatattataagaatttcataacaaatcatgaatttgttaaactaacaatttataac |
202 |
Q |
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| T |
45653143 |
ctattatagtgttaagtattttcaataagtgattaacaaattaagatattataagaatttcataacaaatcatgaatttgttaaactaacaatttagaat |
45653242 |
T |
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| Q |
203 |
ttttctcattttactcgcttgaccagcttatagcatagtagtttctacgatcaaagtggagtttgtgtcttctttcacaagtttacaacannnnnnnata |
302 |
Q |
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| T |
45653243 |
ttttctcattttactcgcttggccagcttatagcatagtagtttctacgatcaaagtggagtttgtgtcttctttcacaagtttacaacatatttttata |
45653342 |
T |
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| Q |
303 |
ttgctacatcaagcgtttgaatgcaaccactaattaatttgcaatctgttgtcagcttgctgattcacccttcactgttttcgtacctat |
392 |
Q |
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| T |
45653343 |
ttgctacatcaagcgtttgaatgcaaccac----taatttgcaatctgttgtcagcttgctgattcgcccttcactgttttcgtacctat |
45653428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 187
Target Start/End: Original strand, 45648615 - 45648793
Alignment:
| Q |
8 |
ccctatgtcctttgcttgtccaatattcaaatcttttttgtagctacaagacctaatattaaaccgattaggcagttgtaatagcgagtacctcactatt |
107 |
Q |
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| T |
45648615 |
ccctatgtcctttgcttgcctaatattcaatt-ttttttgtttctataagacccaatattgaaccgattaggccgttgtaa-agtgagtaactcactatt |
45648712 |
T |
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| Q |
108 |
atagtgttaagtattttcaataagtgattaacaaattaagatatt-ataagaatttcataacaaatcatgaatttgttaaa |
187 |
Q |
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| T |
45648713 |
atagtgtaaagtattttcaacaagtgattagcaaattaagatgttggtaagtatattataacaaatcaacaatttgttaaa |
45648793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 1193438 - 1193299
Alignment:
| Q |
8 |
ccctatgtcctttgcttgtcc--aatattcaaatcttttttgtagctacaagacctaatattaaaccgattaggc-agttgtaatagcgagtacctcact |
104 |
Q |
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| T |
1193438 |
ccctatgtcctttgcttgtccataatattcaactttttgtcgttgttacaagatccaatattgaaccgattaggcaattttttaaagtaagcaactcgct |
1193339 |
T |
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| Q |
105 |
attatagtgttaagtattttcaataagtgattaacaaatt |
144 |
Q |
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| T |
1193338 |
cttatagtgttaagtattttaagtaagtgattaccaaatt |
1193299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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