View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17855_low_15 (Length: 338)
Name: NF17855_low_15
Description: NF17855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17855_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 47 - 328
Target Start/End: Original strand, 33972965 - 33973243
Alignment:
| Q |
47 |
cttctcaaacttcgattgagatacaccaccattcaattgttttgatgttagnnnnnnnattctcgaatgtgtctttagttagtttagtcctcaaatatct |
146 |
Q |
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| T |
33972965 |
cttctcaaacttcgattgagatacacca---ttcaattgttttgatgttagtttttttattctcgaatgtgtctttagttagtttagtcctcaaatatct |
33973061 |
T |
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| Q |
147 |
ttctctttgatcaatttagttcataaattacacgctaaagagaaatttgaagatgtgtttgcaatttcaatacattcaggaactatagtgaccgcgtcgt |
246 |
Q |
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| T |
33973062 |
ttctctttgatcaatttagttcataaattacacgctaaagagaaatttggagatgtgtttgcaatttcaatacattcagggactataatgatcgcgtcgt |
33973161 |
T |
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| Q |
247 |
ctcacacatttagagagcaatattattatttacctgcaaattattccatgagacataaatttcatacacaaattttcctatg |
328 |
Q |
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| T |
33973162 |
ctcacacatttagagagcaatattattatttacctgcaaattattccatgagacataaatttcatacacaaatttttctatg |
33973243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 33980578 - 33980620
Alignment:
| Q |
198 |
gatgtgtttgcaatttcaatacattcaggaactatagtgaccg |
240 |
Q |
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| T |
33980578 |
gatgtgtttgtaatttcaatacattcagggactatattgaccg |
33980620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 37047336 - 37047296
Alignment:
| Q |
193 |
ttgaagatgtgtttgcaatttcaatacattcaggaactata |
233 |
Q |
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| T |
37047336 |
ttgaggatatgtttgcaatttcaatacattcaggaactata |
37047296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 44665849 - 44665785
Alignment:
| Q |
112 |
aatgtgtctttagttagtttagtcctcaaatatctttc-tctttgatcaatttagttcataaatt |
175 |
Q |
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| T |
44665849 |
aatgtgtctttagttagtttaatcctcgaatacgtttcttcattggtcaatttagtccataaatt |
44665785 |
T |
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