View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17855_low_16 (Length: 322)
Name: NF17855_low_16
Description: NF17855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17855_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 52004154 - 52004453
Alignment:
| Q |
19 |
ggtgatcttgttttgttctttctggtctactacgtactcctatatgtattagttatgcaaatttaagtgctaccttcaatggatataagagtttgaaatg |
118 |
Q |
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| T |
52004154 |
ggtgatcttgttttgttctttctggtctactac----tcctatatgtattagttatgcaaatttaagtgctaccttcaatggatataagagtttgaaatg |
52004249 |
T |
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| Q |
119 |
agattcacactctatttttaagttatgtaatgatgaaattaaactcaatgtaaaaattcaatatggtatttatctatcctttatattcatataccaagct |
218 |
Q |
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| T |
52004250 |
agattcacactctatttttaagttatgtaatgatgaaattaaactcaatgtaaaaattcaatatggtatttatctatcctttatattcatataccaagct |
52004349 |
T |
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| Q |
219 |
taatagtgatacgtctccataaagctgattttgtaaaaatagttagacaaatatataaatttaatatatatgttattcgagtctatttactagctaggtt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
52004350 |
taatagtgatacgtctccataaagctgattttgtaaaaatagttagacaaatatataaatttaatatatatgttattggagtctatctactagctaggtt |
52004449 |
T |
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