View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17855_low_18 (Length: 294)
Name: NF17855_low_18
Description: NF17855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17855_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 64 - 294
Target Start/End: Complemental strand, 33447782 - 33447552
Alignment:
| Q |
64 |
ttttattaaagaggcaaagctgaatgtgggggacaatctatgcttgctggtgaattatcctccccgttgcatttatgttgaaattgaaaggttcaattta |
163 |
Q |
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| T |
33447782 |
ttttattaaagaggcaaagctgaatgtgggggacaatctatgcttgcttgtgaattatcctccccgttgcatttatgttgaaattgaaaggttcaattta |
33447683 |
T |
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| Q |
164 |
atttcctttgtttagtaagttatctaatatttattgaatatgttgcatattgtcctctgagattcatgtatattaattattgtttgaggaaggtgaaatg |
263 |
Q |
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| T |
33447682 |
atttcctttgtttagtaagttatctaatatttattgaatatgttgcatactgtcctatgagattcatgtatattaattattgtttgaggaaggtgaaatg |
33447583 |
T |
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| Q |
264 |
gtcgaatcatatgcatcgttttaaatctatc |
294 |
Q |
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| T |
33447582 |
gtcgaatcatatgcatatttttaaatctatc |
33447552 |
T |
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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 52970410 - 52970358
Alignment:
| Q |
11 |
caaaggtcgtgtggcttacacgacaatgtatgtcgtgctattaagcatttctc |
63 |
Q |
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| T |
52970410 |
caaaggtcgtgcggcttacacgacaatgtatgtcgtgctattaagcatttctc |
52970358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 13284541 - 13284489
Alignment:
| Q |
12 |
aaaggtcgtgtggcttacacgacaatgtatgtcgtgctattaagcatttctct |
64 |
Q |
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| T |
13284541 |
aaaggtagtgcggcttacacgacaatgtatgtcgtgctattaaacatttctct |
13284489 |
T |
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