View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17855_low_19 (Length: 281)

Name: NF17855_low_19
Description: NF17855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17855_low_19
NF17855_low_19
[»] chr5 (4 HSPs)
chr5 (116-269)||(6420889-6421042)
chr5 (1-84)||(13988295-13988378)
chr5 (1-84)||(11247240-11247323)
chr5 (1-84)||(36890425-36890507)
[»] chr3 (6 HSPs)
chr3 (3-84)||(12224056-12224137)
chr3 (1-84)||(38247846-38247929)
chr3 (1-84)||(50989251-50989334)
chr3 (1-84)||(51092383-51092466)
chr3 (1-84)||(48034859-48034943)
chr3 (41-84)||(9271158-9271201)
[»] chr8 (4 HSPs)
chr8 (1-84)||(43065956-43066038)
chr8 (1-84)||(1993690-1993774)
chr8 (1-84)||(14342238-14342323)
chr8 (1-33)||(4076820-4076852)
[»] chr6 (3 HSPs)
chr6 (1-84)||(14314037-14314120)
chr6 (15-84)||(1244621-1244690)
chr6 (1-76)||(34792702-34792777)
[»] chr4 (7 HSPs)
chr4 (1-84)||(25164522-25164605)
chr4 (1-84)||(37605742-37605825)
chr4 (1-84)||(55281256-55281339)
chr4 (1-84)||(45995946-45996028)
chr4 (1-84)||(17044051-17044133)
chr4 (41-84)||(43749140-43749183)
chr4 (1-33)||(39631061-39631093)
[»] chr2 (9 HSPs)
chr2 (1-84)||(13697016-13697099)
chr2 (1-84)||(17823627-17823710)
chr2 (1-84)||(36272712-36272795)
chr2 (1-84)||(32599299-32599382)
chr2 (9-84)||(40095311-40095386)
chr2 (41-84)||(42061322-42061365)
chr2 (41-83)||(23860255-23860297)
chr2 (42-82)||(33555455-33555495)
chr2 (10-84)||(36709252-36709325)
[»] chr7 (4 HSPs)
chr7 (1-83)||(30922761-30922843)
chr7 (1-76)||(33496555-33496630)
chr7 (1-84)||(46576293-46576376)
chr7 (48-84)||(48460707-48460743)
[»] chr1 (6 HSPs)
chr1 (4-84)||(29637264-29637344)
chr1 (1-84)||(1995001-1995083)
chr1 (1-84)||(2402976-2403059)
chr1 (9-84)||(27325687-27325762)
chr1 (1-84)||(32267516-32267599)
chr1 (1-84)||(44797518-44797600)
[»] scaffold0533 (1 HSPs)
scaffold0533 (1-76)||(10282-10357)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 116 - 269
Target Start/End: Original strand, 6420889 - 6421042
Alignment:
Q  116 aagtcgtttaagggatctcgatcgacatctacatggtggaaagacatattctagtttgggtctaatgtggggtttgcctcatattggtttttagaatgag 215  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6420889 aagttgtttaagggatctcgatcgacatctacatggtggaaagacatattctagtttgggtctaatgtggggtttgcctcatattggtttttagaaggag 6420988  T
Q  216 ttataacggtagttcgttgttaagggccataattacctatttcacctatataat 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6420989 ttataacggtagttcgttgttaagggccataattacctatttcacctatataat 6421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 13988378 - 13988295
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| ||||||||||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||    
T  13988378 atgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtggggggaccacaaggacacttgtcaaaattgtgtgtgg 13988295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 11247323 - 11247240
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| |||||||||||||||||||||||||       |||||| |||||||||||| |||| |||||||||||||||||||    
T  11247323 atgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtagggggatcacaaagacatttgtcaaaattgtgtgtgg 11247240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 36890507 - 36890425
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| |||| ||||||||||||||||||||       ||||||||||| | ||||||||||||||||||||||||||||||    
T  36890507 atgtgagagtgtatgagagacaatacatgtgagtttttttgtgtgtggggg-accacaaggacacttgtcaaaattgtgtgtgg 36890425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 12224056 - 12224137
Alignment:
Q  3 gtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||| |||||||||||||||||||||||||       ||||||| ||||| ||||||||||||||||||||||||||||||    
T  12224056 gtgagagtgtgtgagagacaatacatgtgagttttcttgtgtgtgaggggaccacaaggacacttgtcaaaattgtgtgtgg 12224137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 38247929 - 38247846
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| ||||||||||||||||||||||||        ||||||||||| | ||||||||||||||||||||||||||||||    
T  38247929 atgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtgggggaaccacaaggacacttgtcaaaattgtgtgtgg 38247846  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 50989334 - 50989251
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| |||||||||||||||||||||||||       | || | |||||| ||||||||||||||||||||||||||||||    
T  50989334 atgtgagagtgtgtgagagacaatacatgtgagtttttttgcgtttagggggaccacaaggacacttgtcaaaattgtgtgtgg 50989251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 51092466 - 51092383
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| |||||||||||||||||||||||||       | || | |||||| ||||||||||||||||||||||||||||||    
T  51092466 atgtgagagtgtgtgagagacaatacatgtgagtttttttgcgtttagggggaccacaaggacacttgtcaaaattgtgtgtgg 51092383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 48034859 - 48034943
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtgggggg-atcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| |||||||||||||||||||| ||||       |||||||||||| | |||||||||||||||||||||||| |||||    
T  48034859 atgtgagagtgtgtgagagacaatacatttgagtttttttgtgtgtgggggggaccacaaggacacttgtcaaaattgtatgtgg 48034943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 9271201 - 9271158
Alignment:
Q  41 gtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    |||||||| |||| |||||||||||||||||||||| |||||||    
T  9271201 gtgtgtggagggaccacaaggacacttgtcaaaattatgtgtgg 9271158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 43065956 - 43066038
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| |||||||||||||||||||||||||       ||||||||||| | ||||||||||||||||||||||||||||||    
T  43065956 atgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtggggg-accacaaggacacttgtcaaaattgtgtgtgg 43066038  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 1993690 - 1993774
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnng-tgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| |||| ||||||||||||||||||||         ||||||||| || ||||||||||||||||||||||||||||||    
T  1993690 atgtgagagtgtatgagagacaatacatgtgagttttttttatgtgtggggagaccacaaggacacttgtcaaaattgtgtgtgg 1993774  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 14342238 - 14342323
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnn-gtgtgtggggggatcacaaggacacttgtc-aaaattgtgtgtgg 84  Q
    ||||||| ||||||||||||||||||||||||         |||| |||||||| |||||||||||||||| ||||||||||||||    
T  14342238 atgtgagagtgtgtgagagacaatacatgtgaattttttttgtgtatggggggaccacaaggacacttgtcaaaaattgtgtgtgg 14342323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4076820 - 4076852
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgag 33  Q
    ||||||| |||||||||||||||||||||||||    
T  4076820 atgtgagagtgtgtgagagacaatacatgtgag 4076852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 14314037 - 14314120
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| ||||||||||||||||||||||||        ||||||||||| | ||||||||||||||||||||||||||||||    
T  14314037 atgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtgggggaaccacaaggacacttgtcaaaattgtgtgtgg 14314120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 1244621 - 1244690
Alignment:
Q  15 gagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    |||||||||||||||||||       ||||||||||||| |||||||||||||| |||||||||||||||    
T  1244621 gagagacaatacatgtgagtttttttgtgtgtggggggaccacaaggacacttgccaaaattgtgtgtgg 1244690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 34792702 - 34792777
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaatt 76  Q
    ||||||| |||||||||||||||||||||||||       |||||| | | || ||||||||||||||||||||||    
T  34792702 atgtgagagtgtgtgagagacaatacatgtgagtttttgtgtgtgtagagagaccacaaggacacttgtcaaaatt 34792777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 25164522 - 25164605
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| |||||||||||||||||||||||||       |||||||| || | ||||||||||||||||||||||||||||||    
T  25164522 atgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtggaggaaccacaaggacacttgtcaaaattgtgtgtgg 25164605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 37605742 - 37605825
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| ||||||||| ||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||    
T  37605742 atgtgagagtgtgtgagggacaatacatgtgactttttttgtgtgtggggggaccacaaggacacttgtcaaaattgtgtgtgg 37605825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 55281339 - 55281256
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    |||||||  |||||||||||||||||||||||        ||||||||||||| ||||||||||||||||||||||||||||||    
T  55281339 atgtgagaatgtgtgagagacaatacatgtgactttttttgtgtgtggggggaccacaaggacacttgtcaaaattgtgtgtgg 55281256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 45995946 - 45996028
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| |||||||||||||||||||||||||       |||||| ||| || |||||| |||||||||||||||||||||||    
T  45995946 atgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgt-gggagaccacaagaacacttgtcaaaattgtgtgtgg 45996028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 17044133 - 17044051
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| ||||||||||||||||||||| ||        ||||||||||  | ||||||||||||||||||||||||||||||    
T  17044133 atgtgagagtgtgtgagagacaatacatgggactttttttgtgtgtgggga-accacaaggacacttgtcaaaattgtgtgtgg 17044051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 43749183 - 43749140
Alignment:
Q  41 gtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    |||||||| |||| |||||||||||||||||||||| |||||||    
T  43749183 gtgtgtggagggaccacaaggacacttgtcaaaattatgtgtgg 43749140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39631061 - 39631093
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgag 33  Q
    ||||||| |||||||||||||||||||||||||    
T  39631061 atgtgagagtgtgtgagagacaatacatgtgag 39631093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 13697016 - 13697099
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| ||||||||||||||||||||||||        ||||||||||| | ||||||||||||||||||||||||||||||    
T  13697016 atgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtgggggaaccacaaggacacttgtcaaaattgtgtgtgg 13697099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 17823710 - 17823627
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| |||||||||||||||||||||||||       ||||||||||||| ||||||||||||| |||||||||| |||||    
T  17823710 atgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtggggggaccacaaggacacttatcaaaattgtatgtgg 17823627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 36272712 - 36272795
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| |||||||| ||||||||||||||||       ||||||| ||||| ||||||||||||||||||||||||||||||    
T  36272712 atgtgagagtgtgtgaaagacaatacatgtgagtttttttgtgtgtgtggggaccacaaggacacttgtcaaaattgtgtgtgg 36272795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 32599299 - 32599382
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| |||||||| ||||||||||||||||       |||||||| |||| |||||||||||||||||||||| |||||||    
T  32599299 atgtgagagtgtgtgacagacaatacatgtgagtttttttgtgtgtggagggaccacaaggacacttgtcaaaattatgtgtgg 32599382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 40095386 - 40095311
Alignment:
Q  9 gtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    |||||||||||||||||||||| ||       ||||||||||||| ||||| |||||||||||||||||| |||||    
T  40095386 gtgtgtgagagacaatacatgtaagtttttttgtgtgtggggggaccacaatgacacttgtcaaaattgtatgtgg 40095311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 42061322 - 42061365
Alignment:
Q  41 gtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  42061322 gtgtgtggggggaccacaaggacacttgtcaaaattgtatgtgg 42061365  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 23860255 - 23860297
Alignment:
Q  41 gtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtg 83  Q
    |||||||||||||||||||| |||||||||||||| |||||||    
T  23860255 gtgtgtggggggatcacaagaacacttgtcaaaatagtgtgtg 23860297  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 33555455 - 33555495
Alignment:
Q  42 tgtgtggggggatcacaaggacacttgtcaaaattgtgtgt 82  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  33555455 tgtgtggggggaccacaatgacacttgtcaaaattgtgtgt 33555495  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 36709252 - 36709325
Alignment:
Q  10 tgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| ||||||||||||||||       ||||||||||||| ||||| |||| |||||||||||||||||||    
T  36709252 tgtgtgacagacaatacatgtgagtttttt-gtgtgtggggggaccacaatgacatttgtcaaaattgtgtgtgg 36709325  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 30922761 - 30922843
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtg 83  Q
    ||||||| |||||||||||||||||||||||||       |||||||||||||  ||||||||||||||||||||| ||||||    
T  30922761 atgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgtggggggactacaaggacacttgtcaaaattatgtgtg 30922843  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33496630 - 33496555
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaatt 76  Q
    ||||||| |||||||||||||||||||| ||||       ||||||||||||||||||| ||||||||||||||||    
T  33496630 atgtgagagtgtgtgagagacaatacatatgagtttttttgtgtgtggggggatcacaaagacacttgtcaaaatt 33496555  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 46576293 - 46576376
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| ||||||||||||||||||||||||        ||||||||||| | ||||||||||||||| ||||||||||||||    
T  46576293 atgtgagagtgtgtgagagacaatacatgtgactttttttgtgtgtgggggaaccacaaggacacttgttaaaattgtgtgtgg 46576376  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 48460743 - 48460707
Alignment:
Q  48 gggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  48460743 gggggatcataaggacacttgtcaaaattgtatgtgg 48460707  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 29637264 - 29637344
Alignment:
Q  4 tgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    |||| ||||| |||||||||||||| ||||       ||||||||| ||| ||||||||||||||||||||||||||||||    
T  29637264 tgagagtgtgagagagacaatacatatgagtttttttgtgtgtgggaggaccacaaggacacttgtcaaaattgtgtgtgg 29637344  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 1995083 - 1995001
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| |||||||||||||||||||||||||       |||||| || ||| ||||| ||||||||||||||||||||||||    
T  1995083 atgtgagagtgtgtgagagacaatacatgtgagtttttttgtgtgt-ggaggaccacaaagacacttgtcaaaattgtgtgtgg 1995001  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 2402976 - 2403059
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| ||||| |||||||||||||||||||        |||||||||||| |||||| |||||| ||||||||||||||||    
T  2402976 atgtgagagtgtgcgagagacaatacatgtgagtttttttttgtgtggggggaccacaagaacacttttcaaaattgtgtgtgg 2403059  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 27325687 - 27325762
Alignment:
Q  9 gtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||||||||||||||||||||        ||||||||||| | ||||||||||||| ||||||||||||||||    
T  27325687 gtgtgtgagagacaatacatgtgactttttttgtgtgtgggggaaccacaaggacacttatcaaaattgtgtgtgg 27325762  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 32267516 - 32267599
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| ||||||||||| |||||||||||||       || |||||  ||| ||||||||||||||||||||||||||||||    
T  32267516 atgtgagagtgtgtgagagccaatacatgtgagtttttttgtatgtggaaggaccacaaggacacttgtcaaaattgtgtgtgg 32267599  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 44797518 - 44797600
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaattgtgtgtgg 84  Q
    ||||||| |||||||||||||||||||||||||       |||| | |||||| ||||||||||||| ||||||||||||||||    
T  44797518 atgtgagagtgtgtgagagacaatacatgtgagtttttttgtgt-ttgggggaccacaaggacacttatcaaaattgtgtgtgg 44797600  T

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Target: scaffold0533 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 10282 - 10357
Alignment:
Q  1 atgtgagcgtgtgtgagagacaatacatgtgagnnnnnnngtgtgtggggggatcacaaggacacttgtcaaaatt 76  Q
    ||||||| || ||||||||||||||||||||||       ||||||| | ||| ||||||||||||||||||||||    
T  10282 atgtgagagtatgtgagagacaatacatgtgagtttttttgtgtgtgagaggaccacaaggacacttgtcaaaatt 10357  T

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