View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17855_low_2 (Length: 683)

Name: NF17855_low_2
Description: NF17855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17855_low_2
NF17855_low_2
[»] chr2 (29 HSPs)
chr2 (175-627)||(31361091-31361543)
chr2 (311-438)||(31387872-31387999)
chr2 (325-460)||(31308047-31308182)
chr2 (17-97)||(31418768-31418848)
chr2 (319-460)||(31418393-31418535)
chr2 (325-454)||(31324778-31324907)
chr2 (306-418)||(31256585-31256697)
chr2 (17-92)||(31282214-31282289)
chr2 (17-92)||(31324453-31324528)
chr2 (17-86)||(31360930-31360999)
chr2 (17-97)||(31293299-31293379)
chr2 (17-86)||(31375278-31375347)
chr2 (17-82)||(31387569-31387634)
chr2 (172-261)||(31418601-31418690)
chr2 (24-72)||(31307727-31307775)
chr2 (171-261)||(31324613-31324703)
chr2 (312-454)||(31293602-31293746)
chr2 (485-558)||(31293806-31293879)
chr2 (171-259)||(31256440-31256528)
chr2 (188-236)||(31375449-31375497)
chr2 (17-92)||(31256287-31256362)
chr2 (188-242)||(31282381-31282435)
chr2 (506-600)||(31308263-31308357)
chr2 (494-599)||(31256761-31256866)
chr2 (318-410)||(31375603-31375695)
chr2 (485-550)||(31375807-31375872)
chr2 (172-244)||(31387709-31387781)
chr2 (194-261)||(31307899-31307966)
chr2 (171-261)||(31293453-31293543)
[»] chr5 (3 HSPs)
chr5 (485-548)||(36214383-36214446)
chr5 (31-71)||(36213441-36213481)
chr5 (194-236)||(36213604-36213646)
[»] chr8 (2 HSPs)
chr8 (24-72)||(20997725-20997773)
chr8 (24-72)||(21013590-21013638)


Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 175 - 627
Target Start/End: Original strand, 31361091 - 31361543
Alignment:
Q  175 gcatacagtgacttgatatttgtccagttttgaataaaattaggtatctttccagagaattgggtgtccgtaatacggctgcattgatcagagagggcat 274  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||    
T  31361091 gcatacagtgaattgatatttgtctagttttgaataaaattaggtatctttccagagaattgggtgtcggtaatatggctgcattgatcagagaggacat 31361190  T
Q  275 aaaaattatatcaaaatttggtcttctctaaacatcataaaagtttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttct 374  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31361191 aaaaattatatcaaaatttggtcttctctaaacatcataaaagcttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcattggtagttct 31361290  T
Q  375 ccagtaaaattgttcgaggaaaatcgcctatatataatttaaaaacaaaacggtaaatgatgattcaaagccatggaaataaaagtagacatttaacatt 474  Q
     ||||||||||||||||||||||| ||||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||||||  || || ||||||    
T  31361291 acagtaaaattgttcgaggaaaattgcctatatattttttaaaaacaaaatggtaaatgttgattcaaagccatggaaataaaagtgaactttgaacatt 31361390  T
Q  475 cggctttcataataaagtgcttacattgttcgaatctgggttagattcccaagctctggaggaatatttccagacatctgattgccaactaactccctat 574  Q
     |||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||     
T  31361391 tggctttcataataaagtgcttacagtattcgaatctgggttagattcccaagctcgggaggaatatttccagacatctgattgccaactaacaccctac 31361490  T
Q  575 atatttcaagttaaacttaggttctactagaattaatttggattgaacacata 627  Q
    |  |||||| | |||||||||||||||||||| | ||||||||||||||||||    
T  31361491 acgtttcaaataaaacttaggttctactagaactgatttggattgaacacata 31361543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 311 - 438
Target Start/End: Original strand, 31387872 - 31387999
Alignment:
Q  311 ataaaagtttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatatata 410  Q
    |||||| |||||| |||||||||||||||||||| |||||||||| ||||||   |||||||||||||||||||| || |||||||||||||||||||||    
T  31387872 ataaaaatttgaagcttacaaatcttgcaatgtagtgagcttggcgaatgtcgcaggtagttctccagtaaaattattagaggaaaatcgcctatatata 31387971  T
Q  411 atttaaaaacaaaacggtaaatgatgat 438  Q
    |||  |||||||||| |||||| |||||    
T  31387972 attgtaaaacaaaacagtaaattatgat 31387999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 325 - 460
Target Start/End: Original strand, 31308047 - 31308182
Alignment:
Q  325 cttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatatataatttaaaaacaaaa 424  Q
    |||||||||||| ||||||| ||||||| || ||||||   ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  31308047 cttacaaatcttccaatgtagtgagcttagctaatgtcgcaggtagttctccagtaaaattgttagaggaaaatcgcctatatatcattgaaaaacaaaa 31308146  T
Q  425 cggtaaatgatgattcaaagccatggaaataaaagt 460  Q
    | |||  | ||||||| ||| ||||||||| |||||    
T  31308147 cagtatcttatgattctaagtcatggaaatcaaagt 31308182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 31418848 - 31418768
Alignment:
Q  17 aagtttctcaaaagtgaaattccagaaggaatcggcccacttaatccacttccttgtatctttctgtcaaaagtaaggtaa 97  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||    
T  31418848 aagtttgtcaaaagtgaaattccagaaggaatcggcccacttaatccgcttccttgtatcattctgtcaaaagtaaagtaa 31418768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 319 - 460
Target Start/End: Complemental strand, 31418535 - 31418393
Alignment:
Q  319 ttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatatataatt-taaa 417  Q
    ||||||||||||| |||||||||||| |||||||||| ||||||   ||||||||||||||||| ||||| || |||| |||||||||||||||| ||||    
T  31418535 ttgaaacttacaactcttgcaatgtagtgagcttggcgaatgtcgcaggtagttctccagtaaatttgttagatgaaagtcgcctatatataattgtaaa 31418436  T
Q  418 aacaaaacggtaaatgatgattcaaagccatggaaataaaagt 460  Q
    || ||| | |||||| ||||||| |||| ||| |||| |||||    
T  31418435 aaaaaatctgtaaattatgattctaagcaatgaaaatcaaagt 31418393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 325 - 454
Target Start/End: Original strand, 31324778 - 31324907
Alignment:
Q  325 cttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatatataatttaaaaacaaaa 424  Q
    ||||||||||| |||||||| ||| ||||| ||||||  | |||||||||| |||||||||||| ||||| | |  ||||||||||||| ||||||||||    
T  31324778 cttacaaatctcgcaatgtagtgaccttggacaatgttgtaggtagttctctagtaaaattgttagaggacattttcctatatataattgaaaaacaaaa 31324877  T
Q  425 cggtaaatgatgattcaaagccatggaaat 454  Q
    | |||||| ||||||| ||||||| |||||    
T  31324878 cagtaaattatgattctaagccatagaaat 31324907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 306 - 418
Target Start/End: Original strand, 31256585 - 31256697
Alignment:
Q  306 acatcataaaagtttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctat 405  Q
    ||||||||||| |||||| |||||||||||||||||||  ||||||| |||||||||   ||||||||||| ||||||||||| ||||||| |  |||||    
T  31256585 acatcataaaaatttgaagcttacaaatcttgcaatgtggtgagctttgccaatgtcgcaggtagttctccggtaaaattgttagaggaaagtttcctat 31256684  T
Q  406 atataatttaaaa 418  Q
    |||||||| ||||    
T  31256685 atataattgaaaa 31256697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 31282214 - 31282289
Alignment:
Q  17 aagtttctcaaaagtgaaattccagaaggaatcggcccacttaatccacttccttgtatctttctgtcaaaagtaa 92  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |||||||    
T  31282214 aagtttttcaaaagtgaaattccagaaggaataggcccacttaatccacttccttgaatcattctgtccaaagtaa 31282289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 31324453 - 31324528
Alignment:
Q  17 aagtttctcaaaagtgaaattccagaaggaatcggcccacttaatccacttccttgtatctttctgtcaaaagtaa 92  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||  |||||||||||||||    
T  31324453 aagtttctcaaaagtgaaatttcagaaggaatcggcccaattaatccactcccttgaatggttctgtcaaaagtaa 31324528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 31360930 - 31360999
Alignment:
Q  17 aagtttctcaaaagtgaaattccagaaggaatcggcccacttaatccacttccttgtatctttctgtcaa 86  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||  ||||||||    
T  31360930 aagtttctcaaaagagaaattccagacggaatcggcccacttaatccacttccttgaatcaatctgtcaa 31360999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 31293299 - 31293379
Alignment:
Q  17 aagtttctcaaaagtgaaattccagaaggaatcggcccacttaatccacttccttgtatctttctgtcaaaagtaaggtaa 97  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||| ||  ||||||||||||||| ||||    
T  31293299 aagtttctcaaaagtgaaatttcagaaggaattggcccgcttaatccactcccttgaatggttctgtcaaaagtaaagtaa 31293379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 31375278 - 31375347
Alignment:
Q  17 aagtttctcaaaagtgaaattccagaaggaatcggcccacttaatccacttccttgtatctttctgtcaa 86  Q
    ||||||| ||||||||||||||||||||| || ||||||||||||||||||||||| |||  ||||||||    
T  31375278 aagtttcgcaaaagtgaaattccagaagggattggcccacttaatccacttccttgaatcactctgtcaa 31375347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 31387569 - 31387634
Alignment:
Q  17 aagtttctcaaaagtgaaattccagaaggaatcggcccacttaatccacttccttgtatctttctg 82  Q
    |||||| |||||||||||||||||| ||||| |||||||||||||||||||||||| ||| |||||    
T  31387569 aagtttgtcaaaagtgaaattccaggaggaaccggcccacttaatccacttccttgaatcattctg 31387634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 31418690 - 31418601
Alignment:
Q  172 agtgcatacagtgacttgatatttgtccagttttgaataaaattaggtatctttccagagaattgggtgtccgtaatacggctgcattga 261  Q
    ||||||||||||   || ||| |||||||||| ||||||||||||||||||||||||||||||||| |||||   || ||||||||||||    
T  31418690 agtgcatacagtttattaatacttgtccagttctgaataaaattaggtatctttccagagaattggttgtcctcgattcggctgcattga 31418601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 31307727 - 31307775
Alignment:
Q  24 tcaaaagtgaaattccagaaggaatcggcccacttaatccacttccttg 72  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31307727 tcaaaagtgaaattccagaaggaataggcccacttaatccacttccttg 31307775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 31324613 - 31324703
Alignment:
Q  171 gagtgcatacagtgacttgatatttgtccagttttgaataaaattaggtatctttccagagaattgggtgtccgtaatacggctgcattga 261  Q
    |||| |||||||||  |||||||||||||||||||||||||| |||||||||||||||   || ||| |||| | ||| ||||||||||||    
T  31324613 gagtacatacagtgtgttgatatttgtccagttttgaataaacttaggtatctttccaagcaactggttgtctgaaattcggctgcattga 31324703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 312 - 454
Target Start/End: Original strand, 31293602 - 31293746
Alignment:
Q  312 taaaagtttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatat--at 409  Q
    ||||| |||||| ||||||||||  |||||||| ||||||| ||||||||    |||||||||||||||||||| || ||||| | |  |||||||  |     
T  31293602 taaaactttgaagcttacaaatcgcgcaatgtagtgagctttgccaatgtggcaggtagttctccagtaaaattattagaggacattttcctatatacac 31293701  T
Q  410 aatttaaaaacaaaacggtaaatgatgattcaaagccatggaaat 454  Q
    |||| ||||||||||| | |||| ||||||| ||||||| |||||    
T  31293702 aattgaaaaacaaaacagcaaattatgattctaagccatagaaat 31293746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 485 - 558
Target Start/End: Original strand, 31293806 - 31293879
Alignment:
Q  485 aataaagtgcttacattgttcgaatctgggttagattcccaagctctggaggaatatttccagacatctgattg 558  Q
    |||||||| |||||| ||||||||||||||||||||| ||||||||  |||||||  |||||||||| ||||||    
T  31293806 aataaagtacttacagtgttcgaatctgggttagatttccaagctcacgaggaatgattccagacatttgattg 31293879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 31256440 - 31256528
Alignment:
Q  171 gagtgcatacagtgacttgatatttgtccagttttgaataaaattaggtatctttccagagaattgggtgtccgtaatacggctgcatt 259  Q
    ||||||||||| ||  |||||||||||||| || |||||||||| |||||||||||||||||  ||| |||||| |||  |||||||||    
T  31256440 gagtgcatacaatgtattgatatttgtccaattctgaataaaatcaggtatctttccagagagctggttgtccgaaatttggctgcatt 31256528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 31375449 - 31375497
Alignment:
Q  188 tgatatttgtccagttttgaataaaattaggtatctttccagagaattg 236  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||    
T  31375449 tgatatttgtccagttctgaataaaatcaggtatctttccagagaattg 31375497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 31256287 - 31256362
Alignment:
Q  17 aagtttctcaaaagtgaaattccagaaggaatcggcccacttaatccacttccttgtatctttctgtcaaaagtaa 92  Q
    ||||| ||||||||||||||| | |||||||| ||||| ||||||||||| ||||| ||  |||||||||||||||    
T  31256287 aagttactcaaaagtgaaatttcggaaggaattggcccgcttaatccactcccttgaatgattctgtcaaaagtaa 31256362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 31282381 - 31282435
Alignment:
Q  188 tgatatttgtccagttttgaataaaattaggtatctttccagagaattgggtgtc 242  Q
    ||||||||| |||||| |||||||||| |||||||||||||||||||||| ||||    
T  31282381 tgatatttgaccagttctgaataaaatcaggtatctttccagagaattggttgtc 31282435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 506 - 600
Target Start/End: Original strand, 31308263 - 31308357
Alignment:
Q  506 gaatctgggttagattcccaagctctggaggaatatttccagacatctgattgccaactaactccctatatatttcaagttaaacttaggttcta 600  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||| |||||  |   |||||| ||||  ||||||||||||| ||| ||||||    
T  31308263 gaatctgggttagatttccaagctcaggaggaatatttccaaacatttgattttccgataactcactatccatttcaagttaaagttaagttcta 31308357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 494 - 599
Target Start/End: Original strand, 31256761 - 31256866
Alignment:
Q  494 cttacattgttcgaatctgggttagattcccaagctctggaggaatatttccagacatctgattgccaactaactccctatatatttcaagttaaactta 593  Q
    |||||| |||||| |||||| ||||||||||||||||  ||||||||||| | ||||| |||||| |   ||| |||||||  ||||||||||||| |||    
T  31256761 cttacagtgttcgtatctggcttagattcccaagctcatgaggaatattttccgacatttgattggccgttaaatccctattcatttcaagttaaaatta 31256860  T
Q  594 ggttct 599  Q
     |||||    
T  31256861 agttct 31256866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 410
Target Start/End: Original strand, 31375603 - 31375695
Alignment:
Q  318 tttgaaacttacaaatcttgcaatgtaatgagcttggccaatgtcatgggtagttctccagtaaaattgttcgaggaaaatcgcctatatata 410  Q
    |||||| |||||||||||  ||||||| | ||||| |||||||||   |||||||| |||||||||||||| || |||| | |||||||||||    
T  31375603 tttgaagcttacaaatctatcaatgtagtcagctttgccaatgtcgcaggtagttcgccagtaaaattgttagatgaaatttgcctatatata 31375695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 550
Target Start/End: Original strand, 31375807 - 31375872
Alignment:
Q  485 aataaagtgcttacattgttcgaatctgggttagattcccaagctctggaggaatatttccagaca 550  Q
    |||||||| |||||| | ||||||| ||| |||||| ||||||||| ||||||| |||||||||||    
T  31375807 aataaagttcttacagtcttcgaatttggcttagatacccaagctcaggaggaagatttccagaca 31375872  T

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Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 31387709 - 31387781
Alignment:
Q  172 agtgcatacagtgacttgatatttgtccagttttgaataaaattaggtatctttccagagaattgggtgtccg 244  Q
    ||||| |||||||  |||||  |||||||||| |||||| ||| ||| |||||||||||||||||| ||||||    
T  31387709 agtgcgtacagtgttttgatgcttgtccagttctgaatataatcaggaatctttccagagaattggttgtccg 31387781  T

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Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 31307899 - 31307966
Alignment:
Q  194 ttgtccagttttgaataaaattaggtatctttccagagaattgggtgtccgtaatacggctgcattga 261  Q
    ||||||||||||||||| |||  |||||||||||||| |||||| |||||  ||| | ||||||||||    
T  31307899 ttgtccagttttgaatataatcgggtatctttccagaaaattggttgtccccaatccagctgcattga 31307966  T

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Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 31293453 - 31293543
Alignment:
Q  171 gagtgcatacagtgacttgatatttgtccagttttgaataaaattaggtatctttccagagaattgggtgtccgtaatacggctgcattga 261  Q
    ||||||||||||||    ||||||||||||||| | ||||||||  |||| |||||||||||| ||| |||||| |||   ||||||||||    
T  31293453 gagtgcatacagtgtaccgatatttgtccagttcttaataaaatctggtacctttccagagaactggttgtccgaaatttcgctgcattga 31293543  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 548
Target Start/End: Original strand, 36214383 - 36214446
Alignment:
Q  485 aataaagtgcttacattgttcgaatctgggttagattcccaagctctggaggaatatttccaga 548  Q
    ||||||||||||||| | || |||| |||||||||||||||| ||| ||||||| |||||||||    
T  36214383 aataaagtgcttacactctttgaatttgggttagattcccaaactcaggaggaagatttccaga 36214446  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 36213441 - 36213481
Alignment:
Q  31 tgaaattccagaaggaatcggcccacttaatccacttcctt 71  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  36213441 tgaaattccagaaggaattggcccacttaatccactccctt 36213481  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 36213604 - 36213646
Alignment:
Q  194 ttgtccagttttgaataaaattaggtatctttccagagaattg 236  Q
    |||||||| |||||||||||| ||||||||| |||||||||||    
T  36213604 ttgtccagctttgaataaaatcaggtatcttcccagagaattg 36213646  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 20997773 - 20997725
Alignment:
Q  24 tcaaaagtgaaattccagaaggaatcggcccacttaatccacttccttg 72  Q
    ||||||||||||||||||||||||| |||||||| || ||||| |||||    
T  20997773 tcaaaagtgaaattccagaaggaattggcccactcaaaccactcccttg 20997725  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 21013590 - 21013638
Alignment:
Q  24 tcaaaagtgaaattccagaaggaatcggcccacttaatccacttccttg 72  Q
    ||||||||||||||||||||||||| |||||||| || ||||| |||||    
T  21013590 tcaaaagtgaaattccagaaggaattggcccactcaaaccactcccttg 21013638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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