View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17855_low_3 (Length: 637)

Name: NF17855_low_3
Description: NF17855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17855_low_3
NF17855_low_3
[»] chr1 (5 HSPs)
chr1 (162-352)||(34026824-34027014)
chr1 (446-626)||(34026462-34026642)
chr1 (338-407)||(34026682-34026751)
chr1 (163-206)||(4060050-4060093)
chr1 (158-206)||(12449312-12449360)
[»] chr8 (9 HSPs)
chr8 (244-331)||(9322240-9322328)
chr8 (324-386)||(9330901-9330963)
chr8 (158-207)||(26847720-26847769)
chr8 (158-205)||(35399944-35399991)
chr8 (158-205)||(22632969-22633016)
chr8 (158-200)||(202577-202619)
chr8 (158-200)||(317414-317456)
chr8 (158-208)||(19220913-19220963)
chr8 (163-205)||(22632327-22632369)
[»] chr2 (5 HSPs)
chr2 (338-398)||(38399731-38399791)
chr2 (158-207)||(29387424-29387473)
chr2 (446-478)||(38399648-38399680)
chr2 (158-207)||(20606920-20606969)
chr2 (244-285)||(38399945-38399986)
[»] chr7 (3 HSPs)
chr7 (158-205)||(3849597-3849644)
chr7 (158-209)||(35892300-35892351)
chr7 (158-209)||(42818550-42818601)
[»] chr4 (7 HSPs)
chr4 (158-208)||(34450815-34450865)
chr4 (158-206)||(13924793-13924841)
chr4 (158-202)||(47157383-47157427)
chr4 (163-206)||(18363653-18363696)
chr4 (158-205)||(36248399-36248446)
chr4 (163-206)||(36599232-36599275)
chr4 (158-207)||(14527575-14527624)
[»] chr3 (8 HSPs)
chr3 (163-224)||(54308458-54308519)
chr3 (158-209)||(3584005-3584056)
chr3 (158-208)||(55325-55375)
chr3 (158-224)||(18745352-18745418)
chr3 (158-200)||(47571945-47571987)
chr3 (160-224)||(18744622-18744686)
chr3 (158-202)||(53344017-53344061)
chr3 (46-74)||(53694772-53694800)
[»] chr5 (7 HSPs)
chr5 (158-205)||(24565573-24565620)
chr5 (158-205)||(24606609-24606656)
chr5 (158-205)||(35524878-35524925)
chr5 (158-200)||(33087472-33087514)
chr5 (158-208)||(39466885-39466935)
chr5 (158-203)||(40372163-40372208)
chr5 (158-206)||(35524122-35524170)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 1e-86; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 162 - 352
Target Start/End: Complemental strand, 34027014 - 34026824
Alignment:
Q  162 aattctaggatgagggatcaattaaattcctcaccggtggaccacttaatttgagcgttagatcaaagtaagactactagatctgatagtcattatcaca 261  Q
    ||||||||  |||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  34027014 aattctagagtgagagatcaattaagtccctcaccggtggaccacttaatttgagcgttagatcaaagtaagactacgagatctgatagttattatcaca 34026915  T
Q  262 ccaaatccaagttatttctctctccctttctgtctttcaaccgcttgaaagattcatttatgtatgctgagtgcctcttcctctcattacc 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34026914 ccaaatccaagttatttctctctccctttctgtctttcaaccgcttgaaagattcatttatgtatgctgagtgcctcttcctctcattacc 34026824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 446 - 626
Target Start/End: Complemental strand, 34026642 - 34026462
Alignment:
Q  446 caaagaaggatcaaattttaggaatctacggtttaacataannnnnnngttagatatgtgagtttaacaactaccatcaattagccatggcagatctctg 545  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34026642 caaagaaggatcaaattttaggaatctacggtttaacataatttttttgttagatatgtgagtttaacaactaccatcaatcagccatggcagatctctg 34026543  T
Q  546 cacaatatcatctacggtttctctatgcgtctcactaccaccatgccacatttcaaatgcagcatccatgttttgagaata 626  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34026542 cacaatatcatctacggtttctctgtgcgtctcactaccaccatgccacatttcaaatgcagcatccatgttttgagaata 34026462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 338 - 407
Target Start/End: Complemental strand, 34026751 - 34026682
Alignment:
Q  338 cttcctctcattaccgagtaactttaacaatggatgagcttttgtattgttaagactgtgagttaacata 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34026751 cttcctctcattaccgagtaactttaacaatggatgagcttttgtattgttaagactgtgagttaacata 34026682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 4060093 - 4060050
Alignment:
Q  163 attctaggatgagggatcaattaaattcctcaccggtggaccac 206  Q
    ||||||||||||||| |||||||||| | |||||||||||||||    
T  4060093 attctaggatgagggctcaattaaatccgtcaccggtggaccac 4060050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 12449360 - 12449312
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccac 206  Q
    |||| ||| |||| ||||||||||||||| | |||||||||||||||||    
T  12449360 ggtggattttagggtgagggatcaattaagtccctcaccggtggaccac 12449312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 244 - 331
Target Start/End: Original strand, 9322240 - 9322328
Alignment:
Q  244 ctgatagtcattatcacaccaaatccaagttatttctct-ctccctttctgtctttcaaccgcttgaaagattcatttatgtatgctga 331  Q
    |||||||||||||||||||  |||||||||||||||||| ||||||| || ||||||||||| |||||||||||||| |||||||||||    
T  9322240 ctgatagtcattatcacacagaatccaagttatttctcttctcccttactctctttcaaccgtttgaaagattcattgatgtatgctga 9322328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 324 - 386
Target Start/End: Original strand, 9330901 - 9330963
Alignment:
Q  324 tatgctgagtgcctcttcctctcattaccgagtaactttaacaatggatgagcttttgtattg 386  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  9330901 tatgccgagtgcctcttcctcttattgccgagtaactttaacaatggatgagcttttgtattg 9330963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 26847769 - 26847720
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccact 207  Q
    |||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  26847769 ggtggattctaggatgagggatcaattaagttcctcaccggtgaaccact 26847720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 35399991 - 35399944
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggacca 205  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  35399991 ggtggattctaggatgagggatcaatcaaatccctcaccggtggacca 35399944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 22633016 - 22632969
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggacca 205  Q
    |||| |||||||| ||||||||||||||| | ||||||||||||||||    
T  22633016 ggtggattctagggtgagggatcaattaagtccctcaccggtggacca 22632969  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 202577 - 202619
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtg 200  Q
    |||||||||||||||||||| |||||||| | |||||||||||    
T  202577 ggtgaattctaggatgagggttcaattaagtccctcaccggtg 202619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 317414 - 317456
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtg 200  Q
    |||||||||||||||||||| |||||||| | |||||||||||    
T  317414 ggtgaattctaggatgagggttcaattaagtccctcaccggtg 317456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 19220913 - 19220963
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccactt 208  Q
    |||||||||||||||||||| |||||||| | | |||||||| ||||||||    
T  19220913 ggtgaattctaggatgagggttcaattaagtccgtcaccggtagaccactt 19220963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 22632327 - 22632369
Alignment:
Q  163 attctaggatgagggatcaattaaattcctcaccggtggacca 205  Q
    |||||||| ||||||||||||||| | ||||||||||||||||    
T  22632327 attctagggtgagggatcaattaagtccctcaccggtggacca 22632369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 338 - 398
Target Start/End: Complemental strand, 38399791 - 38399731
Alignment:
Q  338 cttcctctcattaccgagtaactttaacaatggatgagcttttgtattgttaagactgtga 398  Q
    |||||||||||| |||||||||||||||||||||||| ||||||| |||  ||||||||||    
T  38399791 cttcctctcattgccgagtaactttaacaatggatgaacttttgttttgcaaagactgtga 38399731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 29387424 - 29387473
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccact 207  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||||||    
T  29387424 ggtgaattctaggatgagggagctattaagttcctcaccggtggaccact 29387473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 478
Target Start/End: Complemental strand, 38399680 - 38399648
Alignment:
Q  446 caaagaaggatcaaattttaggaatctacggtt 478  Q
    |||||||||||||||||||||||||||||||||    
T  38399680 caaagaaggatcaaattttaggaatctacggtt 38399648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 20606969 - 20606920
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccact 207  Q
    ||||||||||||| |||||| |||||||| | ||||||||||| ||||||    
T  20606969 ggtgaattctagggtgagggttcaattaagtccctcaccggtgaaccact 20606920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 38399986 - 38399945
Alignment:
Q  244 ctgatagtcattatcacaccaaatccaagttatttctctctc 285  Q
    |||||||||||||||| ||| |||||||||| ||||||||||    
T  38399986 ctgatagtcattatcaaaccgaatccaagttgtttctctctc 38399945  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 3849597 - 3849644
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggacca 205  Q
    |||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  3849597 ggtggattctaggatgagggatcaatcaaatccctcaccggtggacca 3849644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 35892351 - 35892300
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccactta 209  Q
    |||| |||||||| ||||||| ||||||||| ||||||||||| ||||||||    
T  35892351 ggtggattctagggtgagggagcaattaaatccctcaccggtgtaccactta 35892300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 42818601 - 42818550
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccactta 209  Q
    ||||||||||||| |||||| |||||||| | ||||||||||||| ||||||    
T  42818601 ggtgaattctagggtgagggttcaattaagtccctcaccggtggatcactta 42818550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 34450815 - 34450865
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccactt 208  Q
    ||||||||||||| ||||||||||||||| | ||||||||||||| |||||    
T  34450815 ggtgaattctagggtgagggatcaattaagtccctcaccggtggagcactt 34450865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 13924793 - 13924841
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccac 206  Q
    |||| |||||||| |||||| |||||||||| |||||||||||||||||    
T  13924793 ggtggattctagggtgagggctcaattaaatccctcaccggtggaccac 13924841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 47157427 - 47157383
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtgga 202  Q
    ||||||||||||| |||||| |||||||||| |||||||||||||    
T  47157427 ggtgaattctagggtgagggttcaattaaatccctcaccggtgga 47157383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 18363696 - 18363653
Alignment:
Q  163 attctaggatgagggatcaattaaattcctcaccggtggaccac 206  Q
    |||||||| |||||| |||||||| |||||||||||||||||||    
T  18363696 attctagggtgagggttcaattaagttcctcaccggtggaccac 18363653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 36248399 - 36248446
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggacca 205  Q
    ||||||||||| | ||||||| ||||||||| ||||||||||||||||    
T  36248399 ggtgaattctaaggtgagggagcaattaaatccctcaccggtggacca 36248446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 36599232 - 36599275
Alignment:
Q  163 attctaggatgagggatcaattaaattcctcaccggtggaccac 206  Q
    |||||||| |||||| |||||||| |||||||||||||||||||    
T  36599232 attctagggtgagggttcaattaagttcctcaccggtggaccac 36599275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 14527624 - 14527575
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccact 207  Q
    |||| |||||||| ||||||||||||||| | ||||||||||| ||||||    
T  14527624 ggtggattctagggtgagggatcaattaagtccctcaccggtgaaccact 14527575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 54308458 - 54308519
Alignment:
Q  163 attctaggatgagggatcaattaaattcctcaccggtggaccacttaatttgagcgttagat 224  Q
    |||||||| |||||| |||||||| | ||||||||||| |||||||| ||||| ||||||||    
T  54308458 attctagggtgagggttcaattaagtccctcaccggtgaaccacttattttgaccgttagat 54308519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 3584005 - 3584056
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccactta 209  Q
    |||| |||||||| ||||||| ||||||||| ||||||||||| ||||||||    
T  3584005 ggtggattctagggtgagggagcaattaaatccctcaccggtgtaccactta 3584056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 55375 - 55325
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccactt 208  Q
    |||||||||||||||||||| |||||||| | |||||||| | ||||||||    
T  55375 ggtgaattctaggatgagggttcaattaagtccctcaccgatagaccactt 55325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 18745418 - 18745352
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccacttaatttgagcgttagat 224  Q
    ||||||||||||| |||||| ||||| || | ||||||||||| |||||| ||||||| | ||||||    
T  18745418 ggtgaattctagggtgagggttcaatcaagtccctcaccggtgcaccactgaatttgaccattagat 18745352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 47571987 - 47571945
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtg 200  Q
    ||||||||||||| ||||||||||||||| | |||||||||||    
T  47571987 ggtgaattctagggtgagggatcaattaagtccctcaccggtg 47571945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 18744622 - 18744686
Alignment:
Q  160 tgaattctaggatgagggatcaattaaattcctcaccggtggaccacttaatttgagcgttagat 224  Q
    |||||||||||||||||| | ||| || | ||||||||||| |||||| ||||||| | ||||||    
T  18744622 tgaattctaggatgagggtttaatcaagtccctcaccggtgcaccactaaatttgaccattagat 18744686  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 53344017 - 53344061
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtgga 202  Q
    |||| ||||||||||||||||||||| || | |||||||||||||    
T  53344017 ggtggattctaggatgagggatcaatcaagtccctcaccggtgga 53344061  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 74
Target Start/End: Original strand, 53694772 - 53694800
Alignment:
Q  46 gtctctagtaatactcaaatcgagtttac 74  Q
    |||||||||||||||||||||||||||||    
T  53694772 gtctctagtaatactcaaatcgagtttac 53694800  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 24565573 - 24565620
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggacca 205  Q
    |||| |||||||| |||||| |||||||||| ||||||||||||||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24565620  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 24606609 - 24606656
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggacca 205  Q
    |||| |||||||| |||||| |||||||||| ||||||||||||||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24606656  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 35524925 - 35524878
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggacca 205  Q
    |||| |||||||| ||||||||||||||| || |||||||||||||||    
T  35524925 ggtggattctagggtgagggatcaattaagtttctcaccggtggacca 35524878  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 33087514 - 33087472
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtg 200  Q
    |||||||||||||||||||||||||| || | |||||||||||    
T  33087514 ggtgaattctaggatgagggatcaatcaagtccctcaccggtg 33087472  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 39466885 - 39466935
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccactt 208  Q
    ||||||||||||| ||||||  ||||||| | |||||||||||||||||||    
T  39466885 ggtgaattctagggtgagggtccaattaagtccctcaccggtggaccactt 39466935  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 40372208 - 40372163
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggac 203  Q
    |||| |||||||| |||||| |||||||| ||||||||||||||||    
T  40372208 ggtggattctagggtgagggttcaattaagttcctcaccggtggac 40372163  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 35524122 - 35524170
Alignment:
Q  158 ggtgaattctaggatgagggatcaattaaattcctcaccggtggaccac 206  Q
    |||| ||||||||||||| | |||||||| | |||||||||||||||||    
T  35524122 ggtggattctaggatgagagttcaattaagtccctcaccggtggaccac 35524170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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