View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17855_low_5 (Length: 543)
Name: NF17855_low_5
Description: NF17855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17855_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 153 - 525
Target Start/End: Original strand, 6924676 - 6925052
Alignment:
| Q |
153 |
attttaataagatatgtcatctaaaataaatagtaacgtaagttttaagtaggtaaagctttaaaattggcctctaacacgtcaaaggtcatactcaaat |
252 |
Q |
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| T |
6924676 |
attttaataagatgtgtcatctaaaataaatagtaacgtaagttttaagtaggtaaagctttaaaattggcctctaacacgtcaaaggtcatactcaaat |
6924775 |
T |
|
| Q |
253 |
caatatttttcatgaagctagactcttttgatatttttgttatagaagatatttcattcattcaaatagct-nnnnnnnccaacattacaaatgtgtaga |
351 |
Q |
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| T |
6924776 |
caatatttttcatgaagctagactctttttatatttttgttatagaagatatttcattcattcaaatagctaaaaaaaaacaacattacaaatgtgtaga |
6924875 |
T |
|
| Q |
352 |
tccctatccattttcggggtataccaattgtaggggtaaagtacagaatttgtaaattggaccataaattttgtactctctaaccttaaattattgcatn |
451 |
Q |
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| T |
6924876 |
tccctatccattttcggggtataccaattataggggtaaagtacagaatttgtaaattggaccttaaattttgtactctctaaccttaaattattgctta |
6924975 |
T |
|
| Q |
452 |
nnnnnnctataatagtccctctgttgttagaataatgagtcaacgacacaattaacataa---tattgcccaataaa |
525 |
Q |
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| T |
6924976 |
aaaaaactataatagtcactctgttgttagaataatgagtcaacgacacaattaacataatactattgcccaataaa |
6925052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 6923310 - 6923462
Alignment:
| Q |
12 |
atgaatgtaaatataatta---ttattatattaaattttgtaatttgtgttaaatcataaatctgttaacattttatccgatttaatcatactaacctac |
108 |
Q |
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| T |
6923310 |
atgaatgtaaatataattattattattatattaaattttgtaatttgtgttaaatcataaatctgttaacattttatccgatttaatcatactaacctac |
6923409 |
T |
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| Q |
109 |
atctatatttgacatatttaatcaacattctattaaaaaatagaattttaata |
161 |
Q |
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| T |
6923410 |
atctatatttgacatatttaatcaacattctattataaaatagaattttaata |
6923462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 18988965 - 18988910
Alignment:
| Q |
28 |
ttattattatattaaattttgtaatttgtgttaaatcataaatctgttaacatttt |
83 |
Q |
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|||||||||||||| ||||||||||||| |||| | |||||| |||||||||||| |
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| T |
18988965 |
ttattattatattatattttgtaatttgaattaatttataaatttgttaacatttt |
18988910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 817696 - 817745
Alignment:
| Q |
29 |
tattattatattaaattttgtaatttgtgttaaatcataaatctgttaac |
78 |
Q |
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| T |
817696 |
tattattatattatattttgtactttgaattaaatcataaatttgttaac |
817745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 38303949 - 38303895
Alignment:
| Q |
29 |
tattattatattaaattttgtaatttgtgttaaatcataaatctgttaacatttt |
83 |
Q |
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||||||||||||||||||||||||||| | |||| |||||| ||||||| |||| |
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| T |
38303949 |
tattattatattaaattttgtaatttggataaaattataaatttgttaacttttt |
38303895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 47044541 - 47044504
Alignment:
| Q |
33 |
attatattaaattttgtaatttgtgttaaatcataaat |
70 |
Q |
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| T |
47044541 |
attatagtagattttgtaatttgtgttaaatcataaat |
47044504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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