View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17855_low_6 (Length: 527)
Name: NF17855_low_6
Description: NF17855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17855_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 168 - 516
Target Start/End: Complemental strand, 41430036 - 41429684
Alignment:
| Q |
168 |
tatgagcaccctccggctcatatattaactcattactttttcctgattctgttgggatattacattttcgtagtccctctttgtttnnnnnnnnnnnnn- |
266 |
Q |
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| T |
41430036 |
tatgagcaccctccggctcatatattaactcattactttttcctgattctgttgggatattacattttcgtagtccctctttgtttaaaaaaaaaataaa |
41429937 |
T |
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| Q |
267 |
---tgaaatcagtagcttggtattttcaagattatannnnnnnaaaatgcttagagactcaaatcatatcatcactctaattgaaaaatattatgaagat |
363 |
Q |
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| T |
41429936 |
aaattaaatcagtagcttggtattttcaagattatatttttttaaaatgcttagaggctcaaatcatatcatcactctaattgaaaaatattatgaagat |
41429837 |
T |
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| Q |
364 |
gtaacagttgtatttgttgctaacctatttatttcagttaaagtaagtaatgtacaagtatatgtaccttgtatcaaacatgtatgtgtacaaatttgaa |
463 |
Q |
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| T |
41429836 |
gtaacagttgtatttgttgctaacctatttatttcagttaaagtaagtagtgtacaagtatatgtaccttgtatcaaacatgtatgtgtacaaatttgaa |
41429737 |
T |
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| Q |
464 |
gctgccacccacatacgaatactgtctaccttctagaatgaaaatgagaatga |
516 |
Q |
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| T |
41429736 |
gctgccacccacatacgaatactgtctaccttctagaatgagaatgagaatga |
41429684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 41430351 - 41430232
Alignment:
| Q |
14 |
agatggtgttgttggagttgcagagttccagttagttcaaaaatttcgctaattgctggaattagattgggaggttaaggtgtgttaaacgtaccgcaaa |
113 |
Q |
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| T |
41430351 |
agatggtgttgttggagttgcagggttccagttagttcaaaaatttcgctaattgctggaattagattgggaggttaaggtgtgttaaacgtaccgcaaa |
41430252 |
T |
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| Q |
114 |
gctaacttttgtgtggatat |
133 |
Q |
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| T |
41430251 |
gctaacttttgtgtggatat |
41430232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 29999731 - 29999644
Alignment:
| Q |
45 |
ttagttcaaaaatttcgctaattgctggaattagattgggaggttaaggtgtgttaaacgtaccgcaaagctaacttttgtgtggata |
132 |
Q |
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|||||||||||| |||| ||||||| ||||| |||||||| |||||||||||| | | |||||| ||| ||||||||||||||||| |
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| T |
29999731 |
ttagttcaaaaaattcgtcaattgctagaattggattgggaagttaaggtgtgtaacatgtaccgtgaagttaacttttgtgtggata |
29999644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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