View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17855_low_7 (Length: 506)
Name: NF17855_low_7
Description: NF17855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17855_low_7 |
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| [»] scaffold0628 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 25 - 491
Target Start/End: Original strand, 32264083 - 32264549
Alignment:
| Q |
25 |
caatagtgtgttgatgggtaatgtgtggcttgatgactttgagcaattgaaatctctatttcctctagtcattttcttcttccaattttaatttcacatt |
124 |
Q |
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| T |
32264083 |
caatagtgtgttgatgggtaatgtgtggcttgatgactttgagcaattgaaatctctatttcctctagtcattttcttcttccaattttaatttcacatt |
32264182 |
T |
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| Q |
125 |
atgtataaggaaagagaatcgttatacatgactatagataatgacagtggcaggcccaattgaacttgtattatgtatgtactccnnnnnnnttctagtc |
224 |
Q |
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| T |
32264183 |
atgtataaggaaagagaatcgttatacatgactatagataatgacagtggcaggcccaattgaacttgtattatgtatgtactccaaaaaaattctagtc |
32264282 |
T |
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| Q |
225 |
gaatcttaatttaattcctcatcgaaaaatctttttgcaatcctcgtatagtagctagcattatctaattgtaatgattccacaaaccttacagttctgt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32264283 |
gaatcttaatttaattcctcatcgaaaaatctttttgcaatcctcgtatagtagctagcattatctaattgtaatgattccacaaaccttacagttctgt |
32264382 |
T |
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| Q |
325 |
tcttatgtgtatgttgaatccacatgatagtgcagaggctagtagtatatataatatcagtgtggtcctcttaaacatttcaacaggtnnnnnnnttcaa |
424 |
Q |
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|||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32264383 |
tcttatgtgtatattgagtccacatgatattgcagaggctagtagtatatataatatcagtgtggtcctcttaaacatttcaacaggtaaaaaaattcaa |
32264482 |
T |
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| Q |
425 |
taagcaacaccatatatagtaattgatatgaaagaaaaaacatacaaattcttctactaatagaact |
491 |
Q |
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| T |
32264483 |
taagcaacaccacatatagtaattggtataaaagaaaaaacatacaaattcttctactaatagaact |
32264549 |
T |
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Target: scaffold0628 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0628
Description:
Target: scaffold0628; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 420 - 492
Target Start/End: Original strand, 6516 - 6589
Alignment:
| Q |
420 |
ttcaataagcaacaccatatatagtaattgatatgaaagaaa-aaacatacaaattcttctactaatagaactg |
492 |
Q |
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||||||||||||||||| |||| |||||||| | ||| |||| || |||||||||| |||||||| |||||||| |
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| T |
6516 |
ttcaataagcaacaccacatatcgtaattgacacgaaggaaagaatcatacaaatttttctactattagaactg |
6589 |
T |
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