View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17855_low_8 (Length: 435)
Name: NF17855_low_8
Description: NF17855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17855_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 26422054 - 26422464
Alignment:
| Q |
18 |
ggaatgacattaaaagaattgattactggaaatatcgtggaacagggggagaaaacacctaagttagttattcattaagaaagacaattcatagaagaga |
117 |
Q |
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| T |
26422054 |
ggaataacattaaaagaattgattactggaaatattgtggaacagggggagaaaac---taagttagttattcattgagaaagacaattcatagaagaga |
26422150 |
T |
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| Q |
118 |
ctatatgagaagatgcttccaaactttaagactccagccggagaaaatagctgaagttcaggcatgtggtgatgcacattcagggaaagattaatatttt |
217 |
Q |
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| T |
26422151 |
ctatatgagaagatgcttccaaactttaagactccagccggagaaaatagctgaagttcaggcatgtggtgatgcacattcagggacagattaatatttt |
26422250 |
T |
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| Q |
218 |
agggataaaaaagaactcaaaggaaactgcaagtggaactaaaatctggagtacaaaagtgaatattggggaggaataaaattgaaaagggcgatatgag |
317 |
Q |
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| T |
26422251 |
agggataaaaaagaactcaaaggaaactgcaagtggaactaaaatctggagtacaaaagtgaatattggggaggaataaaattgaaaagggcgatatgag |
26422350 |
T |
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| Q |
318 |
aatagtggtgtcaagtgggaggagtcagttgctggaattttgatgatgggcacaaattttttctgagtgaggagctttacttcaggttttgcgggaattt |
417 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26422351 |
aatagtggtgtcaagtgggaggagtcagttgcgggaattttgatgatgggcacaaatttcttctgagtgaggagctttacttcaggttttgcgggaattt |
26422450 |
T |
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| Q |
418 |
tgatgatgtccatc |
431 |
Q |
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|||||||| ||||| |
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| T |
26422451 |
tgatgatggccatc |
26422464 |
T |
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