View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17855_low_9 (Length: 413)
Name: NF17855_low_9
Description: NF17855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17855_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 162 - 400
Target Start/End: Original strand, 49272570 - 49272808
Alignment:
| Q |
162 |
tagcctgtttactcttcattttcactgtaacataatgtagacaatcccactcaactaatcatacaccttgtcaaaatcagctttaaacaaaatgagaagt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49272570 |
tagcctgtttactcttcattttcactgtaacataatgtagacaatcccactcaactaatcatacaccttgtcaaaatcagctttaaacaaaatgagaagt |
49272669 |
T |
|
| Q |
262 |
ttttaacatttattgctatctttatattgctatcagcttgtttagttgacatctttgaagcttatggcttaattttattagagcagaatatcaaatctca |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49272670 |
ttttaacatttattgctatctttatattgctatcagcttgtttagttgacatctttgaagcttatggcttaattttattagagcagaatatcaaatctca |
49272769 |
T |
|
| Q |
362 |
gatactataaggactaaggagaaaactgatgatattctt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49272770 |
gatactataaggactaaggagaaaactgatgatattctt |
49272808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 49272383 - 49272534
Alignment:
| Q |
11 |
tctgctaatcattgaaaagaaacaatcaatacaagataaaattattggnnnnnnnctcaaacattttactataaacaaattttaatttgttgtcaaatta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49272383 |
tctgctaatcattgaaaagaaacaatcaatacaagataaaattattggaaaaaaactcaaacattttactataaacaaattttaatttgttgtcaaatta |
49272482 |
T |
|
| Q |
111 |
gtctatgtatatgtggtaggtggcataaacagatacatcagtgtttaacgtt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49272483 |
gtctatgtatatgtggtaggtggcataaacagatacatcagtgtttaacgtt |
49272534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 380
Target Start/End: Original strand, 49270603 - 49270688
Alignment:
| Q |
295 |
cagcttgtttagttgacatctttgaagcttatggcttaattttattagagcagaatatcaaatctcagatactataaggactaagg |
380 |
Q |
| |
|
|||||||||||||| |||||| | |||||||| |||| || | ||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
49270603 |
cagcttgtttagttaacatctctaaagcttatagcttgatgtgattagagagaaatatcaaatctcagatactataaagactaagg |
49270688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University