View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17856_high_1 (Length: 612)
Name: NF17856_high_1
Description: NF17856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17856_high_1 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 154 - 595
Target Start/End: Original strand, 34849254 - 34849707
Alignment:
| Q |
154 |
tatgcacattatatagtttgcctgtatttgaatgatgtggaatgaaaggaatgaatgatcgctgtttggttgaaatgatggttgaactggtcggtaaggt |
253 |
Q |
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| T |
34849254 |
tatgcacattatatagtttgcctgtgtttgaatgatgtggaatgaaagggatgaat-atcgctgcttgatagaaatgatggttcaactggtcggtaaggt |
34849352 |
T |
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| Q |
254 |
taaatttttgtcattttggatgaaaactcataatccatatttagtattccatcttaatc-----------attcctttaatgtttatgaaattaatcact |
342 |
Q |
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| T |
34849353 |
taaatttttgtcattttggatgaaaactcataatccatatttagtattcgatcttaatcgttgatggattaatcctttaatgtttatgaaattaatcact |
34849452 |
T |
|
| Q |
343 |
taacttttggctttattttgttctcctcaaagatggtatgttgtaaataacttttattttggtgttaatatattttattttgattcgtcnnnnnnnnctt |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34849453 |
taacttttggctttattttgttctcctcaaagatggtatgttgtaaataacttttattttggtgttaatatattttattttgattcgtcaaaaaaaactt |
34849552 |
T |
|
| Q |
443 |
gtttgaatattcattttatatttttgtcaaaaacattattgttagttttatctacaatttat--nnnnnnntctaacaa-ctactcgatacatttctgga |
539 |
Q |
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| T |
34849553 |
gtttgaatattcattttatatttttgtcaaaaacattattgttagttttatctacaatttataaaaaaaaatctaacaacctactcgatacatttctgga |
34849652 |
T |
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| Q |
540 |
cccatcccaaattataggagacattttctttaaaagtgacttgtataattttaaaa |
595 |
Q |
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| T |
34849653 |
accaacccaaattataggagacattttcttt-aaagtgacttgtataattttaaaa |
34849707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 27528390 - 27528468
Alignment:
| Q |
35 |
catatatgtcaaagtgatggaaaagaacgaatctctttcacgtatccacctgatttatctagttttctgaaaatcatgg |
113 |
Q |
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| T |
27528390 |
catatatgtcaaagtgatggaaaagaacgagtatatttcacgtatccaccttatttatctaattttctgaaaatcatgg |
27528468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 47494280 - 47494356
Alignment:
| Q |
39 |
tatgtcaaagtgatggaaaagaacgaatctctttcacgtatccacctg--atttatctagttttctgaaaatcatgg |
113 |
Q |
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| T |
47494280 |
tatgtctaagtgatggaaaagaatgaatagctttcacgtatccacctgatatttatctacttttctaaatatcatgg |
47494356 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 35 - 153
Target Start/End: Original strand, 498617 - 498736
Alignment:
| Q |
35 |
catatatgtcaaagtgatggaaaagaacgaatctctttcacgtatccacctgatttatctagttttctgaaaatcatgg-nnnnnnnntggatctcttca |
133 |
Q |
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| T |
498617 |
catatatgtcaaagtgatggaaaagaacgaatctctttcacgtatccacctgatttatctagttttctgaaaatcatggaaaaaaaaatggatctcttca |
498716 |
T |
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| Q |
134 |
caaaagataaaatctcctat |
153 |
Q |
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| T |
498717 |
caaaagataaaatctcctat |
498736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 615693 - 615574
Alignment:
| Q |
35 |
catatatgtcaaagtgatggaaaagaacgaatctctttcacgtatccacctgatttatctagttttctgaaaatcatgg-nnnnnnnntggatctcttca |
133 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
615693 |
catatatatcaaagtgatggaaaagaacgaatctctttcacgtatccacctgatttatctagttttctgaaaatcatggaaaaaaaaatggatctcttca |
615594 |
T |
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| Q |
134 |
caaaagataaaatctcctat |
153 |
Q |
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| T |
615593 |
caaaagataaaatctcctat |
615574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0279 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 22271 - 22349
Alignment:
| Q |
35 |
catatatgtcaaagtgatggaaaagaacgaatctctttcacgtatccacctgatttatctagttttctgaaaatcatgg |
113 |
Q |
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| T |
22271 |
catatatgtcaaagtgatggaaaagaacgagtatatttcacgtatccaccttatttatctaattttctgaaaatcatgg |
22349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 17211898 - 17211970
Alignment:
| Q |
35 |
catatatgtcaaagtgatggaaaagaacgaatctctttcacgtatccacctgatttatctagttttctgaaaa |
107 |
Q |
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| T |
17211898 |
catatacgttaaagtgatggaaaataacgaatatatttcacgtatccacctgatttatctagttttctgaaaa |
17211970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 9551757 - 9551834
Alignment:
| Q |
35 |
catatatgtcaaagtgatggaaaagaacgaatctctttcacgtatccacctga-tttatctagttttctgaaaatcat |
111 |
Q |
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| T |
9551757 |
catatatgtcaaagtgatgtaaaagaaccagtatctttcatgcatccatctgattttgtctagtttttttaaaatcat |
9551834 |
T |
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