View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17856_high_3 (Length: 383)
Name: NF17856_high_3
Description: NF17856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17856_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 368
Target Start/End: Complemental strand, 33583027 - 33582670
Alignment:
| Q |
12 |
atgaactcttatgatccgtagtttagacaggaagtaagtaaagtttagttaatgattgtttcaatcaggattcgtactta--acttctaattgacttgac |
109 |
Q |
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| T |
33583027 |
atgaacttttatgattcgtagttcagacaggaggtaagtaaaatttagtcaataattatttcaaccaggatttgtacttggtacttccaattgacttgac |
33582928 |
T |
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| Q |
110 |
ctttcctgaacctcatcattaatcactcgaattaaaccatttaatttcagttagaatatattcaaatgctaagttaccgtattctttttcaaagtataag |
209 |
Q |
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| T |
33582927 |
ctttcccgaacctcatcattaatcactcaaattgaaccatttaatttcagttagaatatattcaaatgctaagttactgtattctttttcaaagtataag |
33582828 |
T |
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| Q |
210 |
gaggcaccgaagcaagaactgctatcagaagaatccagtgcgatcttcactcaagttaagagtggtcagtagattgatatagatagaaaattaaaatata |
309 |
Q |
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| T |
33582827 |
gaggcacggaagcaagaactgctatcagaagaatccagtgcgatcttcactcaagttaagagtggtcagtagattgatatagataaaaaattaaaatata |
33582728 |
T |
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| Q |
310 |
gttgatcatggaatatagcctatatttactcttatttatcatcttcttttagatgaaat |
368 |
Q |
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| T |
33582727 |
gttgatcatgg-atatagcctatatttactcttatttatcatcttcttttagatgaaat |
33582670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 211 - 368
Target Start/End: Complemental strand, 33593842 - 33593686
Alignment:
| Q |
211 |
aggcaccgaagcaagaactgctatcagaagaatccagtgcgatcttcactcaagttaagagtggtcagtagattgatatagatagaaaattaaaatatag |
310 |
Q |
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| T |
33593842 |
aggcaccgaagcaagaactgctatcagaa-aatccagcgcgatcttcactcaagttaagagtggtcagtagattgatatagataaaaaattaaattatag |
33593744 |
T |
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| Q |
311 |
ttgatcatggaatatagcctatatttactcttatttatcatcttcttttagatgaaat |
368 |
Q |
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| T |
33593743 |
ttgatcatggaatatagcctatatttactcttatttatcatcttcttttagatgaaat |
33593686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 37230548 - 37230611
Alignment:
| Q |
144 |
aaccatttaatttcagttagaatatattcaaatgctaagttaccgtattctttttcaaagtata |
207 |
Q |
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| T |
37230548 |
aaccatttaatttcagttagagtatatttaaatgctaagttactctattatttttcaaagtata |
37230611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 33596258 - 33596090
Alignment:
| Q |
12 |
atgaactcttatgatccgtagtttagacaggaagtaagtaaagtttagttaatgattgtttcaatcaggattcgtactta--acttctaattgacttgac |
109 |
Q |
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||||||| | || |||| ||||| ||| ||| ||||||||| | |||| |||||||||| ||| |||| |||| |||| |||| ||| |||||||| |
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| T |
33596258 |
atgaactatgataatccatagttcggacgggaggtaagtaaaatctagtcaatgattgttacaaccagggttcgaacttggtacttgcaatcgacttgac |
33596159 |
T |
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| Q |
110 |
ctttcctgaacctcatcattaatcactcgaattaaaccatttaatttcagttagaatatattcaaatgctaa |
181 |
Q |
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| T |
33596158 |
cttcaccgaacctcat---taatcacttgaatagaaccatttaatttcagttagagtatattcaaatgctaa |
33596090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 37237465 - 37237528
Alignment:
| Q |
144 |
aaccatttaatttcagttagaatatattcaaatgctaagttaccgtattctttttcaaagtata |
207 |
Q |
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|||| |||||||||||||||| |||||| |||||||||||||| |||| |||||||||||||| |
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| T |
37237465 |
aaccctttaatttcagttagagtatatttaaatgctaagttactctattatttttcaaagtata |
37237528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 37197456 - 37197551
Alignment:
| Q |
218 |
gaagcaagaactgctatcagaagaatccagtgcgatcttcactcaagttaagagtggtcagtagattgatatagatagaaaattaaaatatagttgatca |
317 |
Q |
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| T |
37197456 |
gaagcaagaatttctttcggaagaatccagcgcgatcttcggtcaagttaagaatggtaaatagat------agatagaaaattaaaatatagttgatca |
37197549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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