View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17856_low_2 (Length: 498)
Name: NF17856_low_2
Description: NF17856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17856_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 52546929 - 52547414
Alignment:
| Q |
1 |
taatgacattgaagtacaaataatgattcagaatacattcagaggcaggtgatcacagatccatgtgacagaaataaaacatatgttgaaaatttaatca |
100 |
Q |
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| T |
52546929 |
taatgacattgaagtacaaataatgattcagaatacattcagaggcaggtgatcacagattcatgtgacagaaataaaacatatgttgaaaatttaatca |
52547028 |
T |
|
| Q |
101 |
taccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgtacccattgaactgatgaacttccacttacagtgggaagttttaaggtttca |
200 |
Q |
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| T |
52547029 |
taccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgtacccattgaactgatgaacttccacttacagtgggaagttttaaggtttca |
52547128 |
T |
|
| Q |
201 |
cccttgagaccaatctgaccagcaacaaaattgaaatggaatttcttaatgttgcattatttccgaaaagcgaaatcacatataaaaatgaatgatacac |
300 |
Q |
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| T |
52547129 |
cccttgagaccaatctgaccagcaacaaaattgaaatggaatttcttaatgttgcattatttccgaaaagcgaaatcacatataaaaatgaatgatacac |
52547228 |
T |
|
| Q |
301 |
atataatgcttcaacacaaaaataaacaagaaattatattatgcttaaacattttcttagtgatgacacaagtaagtatcaacaacatttttcgattttg |
400 |
Q |
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| T |
52547229 |
atataatgcttcaacacaaaaataaacaagaaattatattatgcttaaacattttcttagtgatg--acaagtaagtatcaacaacatttttcgattttg |
52547326 |
T |
|
| Q |
401 |
aaaaacattgtgcaatgtttcttctaccaactgaaacattgctaggcaacaaaccttgtaagaccatttctgttgtgacaagtctctg |
488 |
Q |
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| T |
52547327 |
aaaaacattgtgcaatgtttcttctaccaactgaaacattgctaggcaacaaaccttgtaagaccatttctgttgtgacaagtctctg |
52547414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 5232788 - 5232740
Alignment:
| Q |
101 |
taccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgt |
149 |
Q |
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| T |
5232788 |
taccttgtaccatgtcaaaggttgttttttagccaatgatgatccttgt |
5232740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 84 - 217
Target Start/End: Complemental strand, 17128727 - 17128594
Alignment:
| Q |
84 |
tgttgaaaatttaatcataccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgtacccattgaactgatgaacttccacttacagtgg |
183 |
Q |
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| T |
17128727 |
tgttgaaaactcattcttaccttgtaccatgtcaaaggttgttttttagataaaaatgatccttgtgtccatttaacagaagaacttccacttgtggtat |
17128628 |
T |
|
| Q |
184 |
gaagttttaaggtttcacccttgagaccaatctg |
217 |
Q |
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|||| ||||||| |||||| || || |||||||| |
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| T |
17128627 |
gaaggtttaaggattcacctttcagtccaatctg |
17128594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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