View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17856_low_4 (Length: 367)
Name: NF17856_low_4
Description: NF17856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17856_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 1036108 - 1036436
Alignment:
| Q |
18 |
catcatttctttacgcgatgctaacggatcgcgttatgcctgtacaatttgggaaagacaaagaaggtttattttgtgaaccattttttaattcaacttg |
117 |
Q |
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| T |
1036108 |
catcatttctttacgcgatgctaacggatcgcgttat----------tttgggaaagacaaagaaggtttattttgtgaaccatttttgaattcaacttg |
1036197 |
T |
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| Q |
118 |
gttgttaccaaacaactctcctttttgggatgcaaacgatgttaaaacatatcaaagcacaattgagatggagattatgtctaatgcattgaatgaagat |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1036198 |
gttgttaccaaacgactctcctttttgggatgcaaacgatgttaaaacatatcaaagcacaattgagatggagattatgtctaatacattgaatgaagat |
1036297 |
T |
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| Q |
218 |
ttaccatcaacaatgtatgtggatctaagatatagtggtacatctgatgagagattttttcactgtgaccacagtcaatttcttctcagtaaaattcctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1036298 |
ttaccatcaacaatgtatgtggatctaagatatagtggtacatctgatgagagattttttcactgtgaccacagtcaatttcttctcagtaaaattcctc |
1036397 |
T |
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| Q |
318 |
tgttgtttttcgatgcaggtgagtattttataccttcat |
356 |
Q |
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| T |
1036398 |
tgttgtttttcgatgcaggtgagtattttataccttcat |
1036436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 1011102 - 1011207
Alignment:
| Q |
69 |
ggaaagacaaagaaggtttattttgtgaaccattttttaattcaacttggttgttaccaaacaactctcctttttgggatgcaaacgatgttaaaacata |
168 |
Q |
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| T |
1011102 |
ggaaagacaaacaaggtatattttgtgagccttttttgaattcaacttggttgttaccagaaaagtctcctttttggaatgaaaatcatgttgaaacata |
1011201 |
T |
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| Q |
169 |
tcaaag |
174 |
Q |
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|||||| |
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| T |
1011202 |
tcaaag |
1011207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 6938729 - 6938399
Alignment:
| Q |
18 |
catcatttctttacgcgatgctaacggatcgcgttatgcctgtacaatttgggaaagacaaagaaggtttattttgtgaaccattttttaattcaacttg |
117 |
Q |
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|||||||||| || ||| | ||||||| || ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| | ||||| ||||| |
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| T |
6938729 |
catcatttctatatgcgctcctaacgggacgtgttatgctcgtacagtttggaaaagacaaagaaggtttattttgcgaaccatttctgaattcgacttg |
6938630 |
T |
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| Q |
118 |
gttgttaccaaacaactctcctttttgggatgcaaacgatgttaaaacatatcaaagcacaattgagatggagattatgtctaatgcattgaatgaagat |
217 |
Q |
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|||||||||| | || |||||||||||| ||||| | | ||| |||||||||||||||||||| |||||| | | ||||| |||| ||||||||| |
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| T |
6938629 |
gttgttaccagaaaaatctcctttttggaatgcagaaaaagttcaaacatatcaaagcacaattaagatgg---gtggggctaatacattaaatgaagat |
6938533 |
T |
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| Q |
218 |
ttaccatcaacaatgtatgtggatctaagatatagtggtacatctgatgagagattttttcactgtgaccacagtcaatttcttctcagtaaaattcctc |
317 |
Q |
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|| |||||| || || ||||| || || |||||||| |||||| || ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
6938532 |
tttccatcagcattgcatgtgaatttaggatatagtcctacatcagaagagagattttttcactgtgaccacaaccaatttcttctcagtaatattcctc |
6938433 |
T |
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| Q |
318 |
tgttgtttttcgatgcaggtgagtattttatacc |
351 |
Q |
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| |||||||| || |||||| |||||||| |||| |
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| T |
6938432 |
ttttgtttttggaagcaggtcagtattttgtacc |
6938399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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