View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17856_low_6 (Length: 291)
Name: NF17856_low_6
Description: NF17856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17856_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 22 - 273
Target Start/End: Original strand, 10665222 - 10665473
Alignment:
| Q |
22 |
aataataatcaacgagaaatgttaccattatagaattgatattcaacggttcttgtttcatcctcccatttcttccacctcctcatctgaagcaaattgt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10665222 |
aataataatcaacgagaaatgttaccattatagaattgatattcaacggttcttgtttcatcctcccatttcttccacctcctcatctgaagcaaattgt |
10665321 |
T |
|
| Q |
122 |
gaatttaggtagagacaaacaaagaaaagaaaagtcttgtacgtaataaaaaactttatgatagaaaatatcttagatgagttggnnnnnnntgcatgga |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
10665322 |
gaatttaggtagagacaaacaaagaaaagaaaagtcttgtacgtaataaaaaactttataatagaaaatatcttagatgagttggaaaaaaatgcatgga |
10665421 |
T |
|
| Q |
222 |
atttaataataccttgaatcttcccaaagccagtgttattatacattgtaga |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10665422 |
atttaataataccttgaatcttcccaaagctagtgttattatacattgtaga |
10665473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University