View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17856_low_8 (Length: 282)

Name: NF17856_low_8
Description: NF17856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17856_low_8
NF17856_low_8
[»] chr1 (8 HSPs)
chr1 (13-265)||(48584416-48584668)
chr1 (124-265)||(48619009-48619150)
chr1 (122-263)||(48628108-48628249)
chr1 (123-263)||(11546415-11546555)
chr1 (121-263)||(48666350-48666492)
chr1 (119-263)||(48660756-48660900)
chr1 (133-260)||(48655786-48655913)
chr1 (130-242)||(48652311-48652423)
[»] chr3 (1 HSPs)
chr3 (124-263)||(19666367-19666506)
[»] chr8 (1 HSPs)
chr8 (125-240)||(27227341-27227456)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 48584416 - 48584668
Alignment:
Q  13 aatataaactgcatgaataaaattatccttatccatgtagtgaggaaaggacagtgaaatggatgatattacatgttctagatgttaacattattaatta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48584416 aatataaactgcatgaataaaattatccttatccatgtagtgaggaaaggacagtgaaatggatgatattacatgttctagatgttaacattattaatta 48584515  T
Q  113 atgatgcatgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48584516 atgatgcatgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttgtt 48584615  T
Q  213 tgcattttgcttcaacttctctgctttttcacctattgttgcttccaataaac 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48584616 tgcattttgcttcaacttctctgctttttcacctattgttgcttccaataaac 48584668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 124 - 265
Target Start/End: Complemental strand, 48619150 - 48619009
Alignment:
Q  124 ttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgct 223  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||||  ||||||||| ||    
T  48619150 ttctgaatgtcttccataaattcatcaagattccgatcagaggatccaccaatggccactgcttcatccgccttcttcttccacttcattgcatttttct 48619051  T
Q  224 tcaacttctctgctttttcacctattgttgcttccaataaac 265  Q
    |||||| |||||||||||| ||| |||| |||||||||||||    
T  48619050 tcaactcctctgctttttcccctgttgtagcttccaataaac 48619009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 122 - 263
Target Start/End: Original strand, 48628108 - 48628249
Alignment:
Q  122 gtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttg 221  Q
    |||| |||||||||||||||||  |||||||||||| |||||||||||||||||||||||  |||||||| |||| ||||||||||||  |||||||||     
T  48628108 gttttttaatgtcttccataaatgcatcaagattccaatcagaggatccaccaacggccactgcttcctctgcctccttcttccacttcattgcattttt 48628207  T
Q  222 cttcaacttctctgctttttcacctattgttgcttccaataa 263  Q
    |||||||| |||||||||||| ||| ||||||||||||||||    
T  48628208 cttcaactcctctgctttttcccctgttgttgcttccaataa 48628249  T

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Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 123 - 263
Target Start/End: Original strand, 11546415 - 11546555
Alignment:
Q  123 tttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgc 222  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||  |||||||| ||||| |||||||||||| ||||||||| |    
T  11546415 tttcttaatgtcttccaaaaattcatcaagattccgatcagaggatccaccaatggccactgcttcctcagcctttttcttccactttattgcatttttc 11546514  T
Q  223 ttcaacttctctgctttttcacctattgttgcttccaataa 263  Q
    ||||| | ||| |||||||| |||||||||||||| |||||    
T  11546515 ttcaaatcctcagctttttcccctattgttgcttctaataa 11546555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 263
Target Start/End: Original strand, 48666350 - 48666492
Alignment:
Q  121 tgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcatttt 220  Q
    |||||||||||||||||||||||  |||||||||  || || ||||| |||||||| ||||  ||||||||||||  ||| ||| ||||  |||||||||    
T  48666350 tgtttcttaatgtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttt 48666449  T
Q  221 gcttcaacttctctgctttttcacctattgttgcttccaataa 263  Q
     ||||||| ||||||||||||| ||| ||||  ||||||||||    
T  48666450 tcttcaacgtctctgctttttcccctgttgtaacttccaataa 48666492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 263
Target Start/End: Original strand, 48660756 - 48660900
Alignment:
Q  119 catgtttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcatt 218  Q
    ||||||||||||||||||  |||||  |||||||||  || || ||||| ||||| || ||||  || ||||| ||   | ||||||||||  |||||||    
T  48660756 catgtttcttaatgtcttggataaatgcatcaagatgtcggtccgaggaaccaccgactgccatcgcatcctctgctgccgtcttccacttcattgcatt 48660855  T
Q  219 ttgcttcaacttctctgctttttcacctattgttgcttccaataa 263  Q
    ||| |||||| ||||||||||||| ||| || |||||||||||||    
T  48660856 ttgtttcaacctctctgctttttcccctgttattgcttccaataa 48660900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 260
Target Start/End: Original strand, 48655786 - 48655913
Alignment:
Q  133 tcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgcttcaacttct 232  Q
    ||||| |||||  |||||||||  || || ||||||||||| ||||| |  || ||||||||   ||||||||||||  ||||||||| |||||||| ||    
T  48655786 tcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcct 48655885  T
Q  233 ctgctttttcacctattgttgcttccaa 260  Q
    |||||||||| ||| |||| ||||||||    
T  48655886 ctgctttttcccctgttgtagcttccaa 48655913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 48652311 - 48652423
Alignment:
Q  130 atgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgcttcaact 229  Q
    ||||||| ||||||  ||||||||| | ||||||| |||||||| | ||| |  || ||||||||    |||||||||||  ||||||||| ||||||||    
T  48652311 atgtcttgcataaatgcatcaagatgcagatcagatgatccacctatggcaaccgcatcctccgctgctttcttccacttgattgcatttttcttcaact 48652410  T
Q  230 tctctgctttttc 242  Q
     ||||||||||||    
T  48652411 cctctgctttttc 48652423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 124 - 263
Target Start/End: Complemental strand, 19666506 - 19666367
Alignment:
Q  124 ttcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgct 223  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||    ||||  ||||||||||||   |||||||||||  ||||||||||||    
T  19666506 ttcttaatgtcttccataaattcatcaagattccgatcagaggaaccaccggtcgccaccgcttcctccgccgctttcttccacttgattgcattttgct 19666407  T
Q  224 tcaacttctctgctttttcacctattgttgcttccaataa 263  Q
    |||||| |||| ||||||| ||||||||||||||||||||    
T  19666406 tcaactcctctcctttttctcctattgttgcttccaataa 19666367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 27227341 - 27227456
Alignment:
Q  125 tcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttttttgcattttgctt 224  Q
    |||||||||||||||||||  |||||| || |||||||||||| ||||| || || |  ||  |||||||   ||||||||||||  |||  ||||||||    
T  27227341 tcttaatgtcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgctt 27227440  T
Q  225 caacttctctgctttt 240  Q
    |||| |||||||||||    
T  27227441 caacatctctgctttt 27227456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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