View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17857_low_1 (Length: 407)
Name: NF17857_low_1
Description: NF17857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17857_low_1 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 175 - 407
Target Start/End: Complemental strand, 3157366 - 3157133
Alignment:
| Q |
175 |
taactgtcatcatagccaaataaccaccaagaattattccagtggtaaatatctctgccagcttccagctatctggatatggagatggctttaccctatc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3157366 |
taactgtcatcatagccaaataaccaccaagaattattccagtggtaaatatctctgccagcttccagctatctggatatggagatggctttaccctatc |
3157267 |
T |
|
| Q |
275 |
cttggatattgtcataatagtacctgacataatcaacaaatcattaaaagtttatggacaaaaaatagagtaagaaatatggtt-ttttgacattaatta |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3157266 |
cttggatattgtcataatagtacctgacataatcaacaaatcattaaaagtttatggacaaaaaatagagtaagaaatatggtttttttgacattaatta |
3157167 |
T |
|
| Q |
374 |
gtctgtaacggtgacctaaatatccatgacttta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3157166 |
gtctgtaacggtgacctaaatatccatgacttta |
3157133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 3157525 - 3157428
Alignment:
| Q |
16 |
aatatttgacatatgaatctaatcatgtgttaccacatcatcatttaattagtagtataaaaacatgatactgaggatacaattaattttatttattt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3157525 |
aatatttgacatatgaatctaatcatgtgttaccacatcatcatttaattagtagtataaaaacatgatactgaggatacaattaattttatttattt |
3157428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 44533558 - 44533478
Alignment:
| Q |
219 |
gtaaatatctctgccagcttccagctatctggatatggagatggctttaccctatccttggatattgtcataatagtacct |
299 |
Q |
| |
|
||||||||||| | |||||||||||||||||| || ||||| ||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
44533558 |
gtaaatatctccgatagcttccagctatctggaagaggtgatggttttaccctatctttggaaattgtcatgatagtacct |
44533478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 50276827 - 50276749
Alignment:
| Q |
221 |
aaatatctctgccagcttccagctatctggatatggagatggctttaccctatccttggatattgtcataatagtacct |
299 |
Q |
| |
|
|||||||||| ||| ||||| || ||||| ||||||||| ||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
50276827 |
aaatatctctctcagtttccaactgtctggcattggagatggttttactctatccttggatattgtcataatggtacct |
50276749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 971433 - 971498
Alignment:
| Q |
234 |
agcttccagctatctggatatggagatggctttaccctatccttggatattgtcataatagtacct |
299 |
Q |
| |
|
|||||||| ||||| ||| ||| || ||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
971433 |
agcttccaactatcaggaagtggtgaaggcttaaccctatctttggatattgtcataatggtacct |
971498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University