View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17857_low_2 (Length: 315)

Name: NF17857_low_2
Description: NF17857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17857_low_2
NF17857_low_2
[»] chr4 (2 HSPs)
chr4 (6-313)||(20624942-20625249)
chr4 (24-195)||(24426843-24427014)
[»] chr5 (5 HSPs)
chr5 (6-313)||(23333378-23333685)
chr5 (24-247)||(24508419-24508642)
chr5 (104-313)||(34894524-34894733)
chr5 (105-196)||(32412449-32412540)
chr5 (71-163)||(7707717-7707808)
[»] chr2 (3 HSPs)
chr2 (17-300)||(40557370-40557653)
chr2 (17-259)||(25559786-25560028)
chr2 (86-196)||(268652-268762)
[»] chr6 (3 HSPs)
chr6 (13-161)||(21774510-21774658)
chr6 (13-247)||(8700155-8700389)
chr6 (132-160)||(20482211-20482239)
[»] chr3 (1 HSPs)
chr3 (13-313)||(20598866-20599166)
[»] chr7 (1 HSPs)
chr7 (104-196)||(35663793-35663885)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 6 - 313
Target Start/End: Original strand, 20624942 - 20625249
Alignment:
Q  6 gacatcatcaaccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaact 105  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20624942 gacatcttcaaccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaact 20625041  T
Q  106 cttcatcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagccatc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| |||    
T  20625042 cttcatcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccaaaactttttcccacagtttggattgtagctatc 20625141  T
Q  206 tgtgacagttcgaacaactgattcttctccacacctgcattccgtgattgctctctttctaagactagaaccaacagacccagctgattgacccattttc 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||      
T  20625142 tgtgacagttcgaacaactgattcttctccacacctgcattccgtgattgctctctttctgagactagaaccaacagacccagctgattgacccatttct 20625241  T
Q  306 ttggacat 313  Q
    ||||||||    
T  20625242 ttggacat 20625249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 195
Target Start/End: Complemental strand, 24427014 - 24426843
Alignment:
Q  24 cttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatcaactaacttga 123  Q
    ||||| ||| ||||||||| ||||||||| | ||| || |||| || |||||||||   ||||||||| |||||||| | ||||||||| | |||||| |    
T  24427014 cttgttttctccaattcatgcttcaacttggcatttttcttctgcagctttgcaatcaacaaatccctctcatcagtaagctcttcatccagtaacttaa 24426915  T
Q  124 agaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggat 195  Q
    | ||||||||||| || ||||| ||||| ||||||||| |||| ||||| ||  ||||||| ||||||||||    
T  24426914 aaaaactacaacctttatcaaagtgattcttgtagtttttgcatccccaaaatcttttcccacaatttggat 24426843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 6 - 313
Target Start/End: Original strand, 23333378 - 23333685
Alignment:
Q  6 gacatcatcaaccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaact 105  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23333378 gacatcttcaaccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaact 23333477  T
Q  106 cttcatcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagccatc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |||    
T  23333478 cttcatcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccacagtttgggttgtagctatc 23333577  T
Q  206 tgtgacagttcgaacaactgattcttctccacacctgcattccgtgattgctctctttctaagactagaaccaacagacccagctgattgacccattttc 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||      
T  23333578 tgtgacagttcgaacaactgattcttctccacacctgcattccgtgattgctctctttctgagactagaaccaacagatccagctgattgacccatttct 23333677  T
Q  306 ttggacat 313  Q
    ||||||||    
T  23333678 ttggacat 23333685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 24508419 - 24508642
Alignment:
Q  24 cttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatcaactaacttga 123  Q
    ||||| ||| ||||||||| ||||||||| | ||| || |||| || |||||||||   ||||||||| |||||||| | ||||||||| | |||||| |    
T  24508419 cttgttttctccaattcatgcttcaacttggcatttttcttctgcagctttgcaatcaacaaatccctctcatcagtaagctcttcatccagtaacttaa 24508518  T
Q  124 agaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagccatctgtgacagttcgaacaac 223  Q
    | ||||||||||| || ||| | ||||||||||||||  |||| ||||| ||  |||| || || ||||||||   |  ||| |||||||| ||||  ||    
T  24508519 aaaaactacaacctttatcatagtgatttttgtagttcttgcatccccaaaatctttttccacagtttggatttgtgttatcagtgacagtacgaatcac 24508618  T
Q  224 tgattcttctccacacctgcattc 247  Q
    ||||||||| |||||||| |||||    
T  24508619 tgattcttcaccacacctacattc 24508642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 313
Target Start/End: Complemental strand, 34894733 - 34894524
Alignment:
Q  104 ctcttcatcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagcca 203  Q
    ||||||||| | |||||| || |||| |||||| || ||||| ||||| ||||| ||| |||| || || || |||||||| |||||||||||   |  |    
T  34894733 ctcttcatccagtaacttaaaaaaaccacaacctttatcaaagtgattcttgtaatttttgcatccacaaaattttttcccacaatttggattcgtgtta 34894634  T
Q  204 tctgtgacagttcgaacaactgattcttctccacacctgcattccgtgattgctctctttctaagactagaaccaacagacccagctgattgacccattt 303  Q
    || || ||||| ||||  |||| |||||| |||||||| ||||| || | ||||||  |||| | ||| ||||||||||| |||   ||||| |||||||    
T  34894633 tcagtaacagtacgaatcactgtttcttcaccacacctacattcagtcactgctcttcttctcatactcgaaccaacagatccataggattggcccattt 34894534  T
Q  304 tcttggacat 313  Q
     ||| |||||    
T  34894533 gctttgacat 34894524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 32412540 - 32412449
Alignment:
Q  105 tcttcatcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggatt 196  Q
    ||||||||||||||| | ||| ||||||| || ||||||  |  |||||| |||||||| |||||||| || || ||||| |||||||||||    
T  32412540 tcttcatcaactaacctaaagtaactacatcctttgtcacttgaatttttatagtttctacaaccccaaaatttcttcccacaatttggatt 32412449  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 7707808 - 7707717
Alignment:
Q  71 ctttgcaattttcaaatccctatcatcagtgaactcttcatcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttct 163  Q
    |||| |||| ||||||| ||||||||||   |  |||||||||| |||||| || ||||||||||| || |||||||||||||  ||||||||    
T  7707808 ctttacaatcttcaaattcctatcatcatctacttcttcatcaattaacttaaa-aaactacaacctttatcaaattgattttcatagtttct 7707717  T

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Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 40557653 - 40557370
Alignment:
Q  17 ccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatcaact 116  Q
    |||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||   |||||||||||||||    
T  40557653 ccaagatctggtcttccccaattgattcttcaattttgtattctttttctccaactttgcaatcttcaaatccttgtcatcacataactcttcatcaact 40557554  T
Q  117 aacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagccatctgtgacagttc 216  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||| || || ||||||||||||  |||||| |||||||    
T  40557553 aacttgaagaaaatacaacccttgtcatattgatttttgtagtttttgcaacccaagaacttttttccacagtttggattgtaggtatctgtaacagttc 40557454  T
Q  217 gaacaactgattcttctccacacctgcattccgtgattgctctctttctaagactagaaccaacagacccagctgattgaccca 300  Q
     ||||| || |||||||||||||||||||||||| |||||||||||||| | | | ||||| ||||||  ||||||||||||||    
T  40557453 taacaattgtttcttctccacacctgcattccgtaattgctctctttctcaaattcgaacctacagacatagctgattgaccca 40557370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 25560028 - 25559786
Alignment:
Q  17 ccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatcaact 116  Q
    |||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||   |||||||||||||||    
T  25560028 ccaagatctagtcttccccaattgattcttcaattttgtattctttttctccaactttgcaatcttcaaatccttgtcatcacataactcttcatcaact 25559929  T
Q  117 aacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagccatctgtgacagttc 216  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || || ||||||||||||  |||||| |||||||    
T  25559928 aacttgaagaaactacaacccttgtcatattgatttttgtagtttctgcaacccaagaacttttttccacagtttggattgtaggtatctgtaacagttc 25559829  T
Q  217 gaacaactgattcttctccacacctgcattccgtgattgctct 259  Q
     |||||||| |||||||||||||||||||||||  ||||||||    
T  25559828 taacaactgtttcttctccacacctgcattccgaaattgctct 25559786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 196
Target Start/End: Complemental strand, 268762 - 268652
Alignment:
Q  86 atccctatcatcagtgaactcttcatcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccg 185  Q
    ||||||||||||||| | ||||||||| |  || ||||| || |||||||| || ||  ||||||| ||||||||| ||||  |||| ||| |||| ||     
T  268762 atccctatcatcagtaacctcttcatccaacaatttgaaaaagctacaacctttatctcattgattcttgtagtttttgcatgcccaaaacctttttcca 268663  T
Q  186 caatttggatt 196  Q
    |||||||||||    
T  268662 caatttggatt 268652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 21774658 - 21774510
Alignment:
Q  13 tcaaccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21774658 tcaaccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatc 21774559  T
Q  113 aactaacttgaagaaactacaacccttgtcaaattgatttttgtagttt 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21774558 aactaacttgaagaaactacaacccttgtcaaattgatttttgtagttt 21774510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 8700155 - 8700389
Alignment:
Q  13 tcaaccaaaatcttgtcttccccaattcattcttcaactttgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatc 112  Q
    |||||||||||||||||||| | |   |  ||||||||||   ||| ||||||||||| || ||||| || | |||||| |||||| |||||||||||||    
T  8700155 tcaaccaaaatcttgtcttctcaagcactgtcttcaacttctgattttttttctccaatttcgcaatcttaatatccctttcatcaatgaactcttcatc 8700254  T
Q  113 aactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagccatctgtgaca 212  Q
    |||||||||||| |||||||| || |||||  | ||||||||||||||||| || |||||||||||||| || ||||||||||| |  | ||| || |||    
T  8700255 aactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacatccccagaacttttttccacaatttggattctgactatcagtaaca 8700354  T
Q  213 gttcgaacaactgattcttctccacacctgcattc 247  Q
    ||||||||||| |  ||||| ||||||||||||||    
T  8700355 gttcgaacaacagtatcttcaccacacctgcattc 8700389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 20482239 - 20482211
Alignment:
Q  132 caacccttgtcaaattgatttttgtagtt 160  Q
    |||||||||||||||||||||||||||||    
T  20482239 caacccttgtcaaattgatttttgtagtt 20482211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 313
Target Start/End: Original strand, 20598866 - 20599166
Alignment:
Q  13 tcaaccaaaatcttgtcttccccaattcattcttcaactt-tgtattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcat 111  Q
    |||||||||||||||||||| | |   || |||||||||| || ||| ||||||||||| || ||||| || | |||||| |||||| ||||||||||||    
T  20598866 tcaaccaaaatcttgtcttctcaagcacagtcttcaacttctgaatt-tttttctccaatttcgcaatcttaatatccctttcatcaatgaactcttcat 20598964  T
Q  112 caactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggattgtagccatctgtgac 211  Q
    ||||||||||||| |||||||| || |||||  | ||||||||||||||||| |||||||| |||||||| || ||||||||||| |  | ||| || ||    
T  20598965 caactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacaaccccataacttttttccacaatttggattctgactatcagtaac 20599064  T
Q  212 agttcgaacaactgattcttctccacacctgcattccgtgattgctctctttctaagactagaaccaacagacccagctgattgacccattttcttggac 311  Q
    ||||||||||||    ||||| ||||||||||||||    |||||||||||||| ||| | ||||| || || ||||| || |||| ||||| ||| |||    
T  20599065 agttcgaacaacaatatcttcaccacacctgcattcaaaaattgctctctttctcagattcgaaccgacggaaccagcagactgactcatttgcttcgac 20599164  T
Q  312 at 313  Q
    ||    
T  20599165 at 20599166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 35663793 - 35663885
Alignment:
Q  104 ctcttcatcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccgcaatttggatt 196  Q
    ||||||||| | |||||| || ||||||||||| || ||||| ||||| ||||| ||| |||| ||||| || |||||||| || ||||||||    
T  35663793 ctcttcatccagtaacttaaaaaaactacaacctttatcaaagtgattcttgtaatttttgcatccccaaaattttttcccacagtttggatt 35663885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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