View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17858_high_1 (Length: 813)
Name: NF17858_high_1
Description: NF17858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17858_high_1 |
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| [»] scaffold1089 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 712; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 11 - 794
Target Start/End: Original strand, 2468217 - 2469003
Alignment:
| Q |
11 |
ggagcagagagcatacgacaaaagctattgaatttgaaggcatcatcctcgaagctgaaaacag-ctagtgaataacagagtgaggtccaacgctttgaa |
109 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||||||| ||||||||||||||||||||| |
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| T |
2468217 |
ggagcagagagcatacgacaaaagctatcgaatttgaaggcatcatcctcaaagctgaaaaggggctagtgaataacaaagtgaggtccaacgctttgaa |
2468316 |
T |
|
| Q |
110 |
agaactgttgcagtgaaagcttgtttgatgtgaagaaaagagagaatgtgagacaataactcatccgttaaattgcttattctatcgactaaagccgttg |
209 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2468317 |
agaactgttgcagtgaaagcttgtttgatgggaagaaaagagaaaatgtgagacaataactcatccgttaaatcgcttattctatcgactaaagccgttg |
2468416 |
T |
|
| Q |
210 |
gatcctcctcatgtcatgtaaatccttaggcacatgactgaattgtccatagctaggttttggatctcagccaggcacccctctgattgattctatcacc |
309 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2468417 |
gatcctcctcatgtcatgtaaatcgttaggcacatgactgaattgtccatagctaggttttggatctcagccaggcacccctctgattgattctatcacc |
2468516 |
T |
|
| Q |
310 |
cccgatattctcggccttcaaaccttccatatcacaagtgtcttcaccatgaccaatgatgccacaattgaagcaaaacaaaggaaaattttcaaatcta |
409 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2468517 |
cccgatattctcggccttcaaaccttccatatcacaagtgtcttcaccatgaccaatgatgccacaattgaagcaaaacaaaggaaaattttcaaatcta |
2468616 |
T |
|
| Q |
410 |
aaattcagccaactaactccatctctttcattgcctatgtaaagtccaggaag--cagagttactgatatcaaacaacaccttcactttaataattttgg |
507 |
Q |
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| T |
2468617 |
aaattcagccaactaactccatctctttcattgcctatgtaaagtccaggaagcacagagttactgatatcaaacaacaccttcactttaataattttgg |
2468716 |
T |
|
| Q |
508 |
cttgtcagggaaatcataaacgtccacatcctccaccttgccaaattgttctcctaattgtcttcccatattaatggacctttcaatattcttttgatat |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2468717 |
cttgtcagggaaatcataaacgtccacatcctccaccttgccaaattgttctcctaattgtcttcccatattaatggacctttcaatattcttttgatat |
2468816 |
T |
|
| Q |
608 |
cactttctttatccagcagaatttggtacctaccatctccaatttcagaaattcttaatccttgaaggttactatagattcttgtcaaagcattatgatc |
707 |
Q |
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| T |
2468817 |
cactttctttatccagcagaatttggtacctactatctccaatttcagaaattcttaatccttgaaggttactacagattcttgtcaaagcattatgatc |
2468916 |
T |
|
| Q |
708 |
agctgttacagagagagttttctttagcaagaaatatgccaacaagacttttctgacaatgtttaacactatcgtgaatgtggcttt |
794 |
Q |
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| T |
2468917 |
agctgttacagagagagttttctttagcaagaaatttgccaacaagacttttctgacaatgttgaacactatcatgaatgtggcttt |
2469003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 195
Target Start/End: Complemental strand, 7814106 - 7813988
Alignment:
| Q |
77 |
agtgaataacagagtgaggtccaacgctttgaaagaactgttgcagtgaaagcttgtttgatgtgaagaaaagagagaatgtgagacaataactcatccg |
176 |
Q |
| |
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|||||||| |||||| |||||| ||||| ||||| || |||| || |||||| |||| | | |||||||||||||||||||||||||||||||||| |
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| T |
7814106 |
agtgaatagcagagtccggtccatcgcttggaaagtacggttgtagagaaagcgagtttagttgggagaaaagagagaatgtgagacaataactcatccg |
7814007 |
T |
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| Q |
177 |
ttaaattgcttattctatc |
195 |
Q |
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| T |
7814006 |
gtaaatcgctgattctatc |
7813988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 7806768 - 7806889
Alignment:
| Q |
77 |
agtgaataacagagtgaggtccaacgctttgaaagaactgttgcagtgaaagcttgtttgatgtgaagaaaagagagaatgtgagacaataactcatccg |
176 |
Q |
| |
|
|||||||| ||||||| |||||| ||||| ||||||| | | ||| ||||| ||||| | || |||||||||||||||| | || ||||||||| | |
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| T |
7806768 |
agtgaatagcagagtgcggtccaccgcttggaaagaatggacgtagtaaaagccagtttggtttggagaaaagagagaatgtaaagcagtaactcatctg |
7806867 |
T |
|
| Q |
177 |
ttaaattgcttattctatcgac |
198 |
Q |
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| T |
7806868 |
gtaaatcacttattctatcgac |
7806889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 37997597 - 37997716
Alignment:
| Q |
77 |
agtgaataacagagtgaggtccaacgctttgaaagaactgttgcagtgaaagcttgtttgatgtgaagaaaagagagaatgtgagacaataactcatccg |
176 |
Q |
| |
|
|||||| | |||||| |||||| |||||||||||||| |||| ||| ||||| |||| || | ||||||||||| |||| | ||||||||||||| | |
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| T |
37997597 |
agtgaacagcagagtagggtccaccgctttgaaagaacagttgtagtaaaagcgagtttcattggtagaaaagagagtatgtaacacaataactcatctg |
37997696 |
T |
|
| Q |
177 |
ttaaattgcttattctatcg |
196 |
Q |
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||||| ||| ||||||||| |
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| T |
37997697 |
gtaaatcgctgattctatcg |
37997716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 195
Target Start/End: Original strand, 19317663 - 19317781
Alignment:
| Q |
77 |
agtgaataacagagtgaggtccaacgctttgaaagaactgttgcagtgaaagcttgtttgatgtgaagaaaagagagaatgtgagacaataactcatccg |
176 |
Q |
| |
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|||||||| |||||| |||||||||||| ||||||| | || ||| |||||| |||| | | |||||||||||||||| | |||||||||||| | |
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| T |
19317663 |
agtgaatagcagagttgggtccaacgcttggaaagaatggctgtagtaaaagctagttttgttgggagaaaagagagaatgtaaatcaataactcatctg |
19317762 |
T |
|
| Q |
177 |
ttaaattgcttattctatc |
195 |
Q |
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||||| |||||||||||| |
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| T |
19317763 |
gtaaatcgcttattctatc |
19317781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 1599 - 1705
Alignment:
| Q |
89 |
agtgaggtccaacgctttgaaagaactgttgcagtgaaagcttgtttgatgtgaagaaaagagagaatgtgagacaataactcatccgttaaattgctta |
188 |
Q |
| |
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|||| |||||| ||||| ||||||||||| | ||||||||| |||| || ||||||||||||| |||||| | ||||| ||||| | ||| || || | |
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| T |
1599 |
agtggggtccaccgcttcgaaagaactgtggtagtgaaagcgattttggtgggaagaaaagagagtatgtgacataataattcatcaggtaagttactga |
1698 |
T |
|
| Q |
189 |
ttctatc |
195 |
Q |
| |
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||||||| |
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| T |
1699 |
ttctatc |
1705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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