View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17858_high_13 (Length: 303)
Name: NF17858_high_13
Description: NF17858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17858_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 37632303 - 37632025
Alignment:
| Q |
11 |
aatttgtttcataacagaaaaaatcccagctgaatcactactgcagcagaaaacataattgatgatgttgtatgcgtgctgtcagcagccgaaaagcaat |
110 |
Q |
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| T |
37632303 |
aatttgtttcataacagaaaaaatcccagccgaatcactactgcagcagaaaacagaattgatgatgctgtatgcgtgttgtcagcagccgaaaagcaat |
37632204 |
T |
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| Q |
111 |
catcgacaccgtatacctcagcgtcaacctctcagtcaaattgatagatcaacttcgatctattacatatttaatcaatggcatacatatcaacaatata |
210 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37632203 |
caccgacaccgtatacctcagcgtcaacctctcagtcaaattgatagatcaacttcgatctattacatattcaatcaatggcatacatatcaacaatata |
37632104 |
T |
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| Q |
211 |
gattgagagacatggataatctgatcactttgtttttgtcacatttgtatgatattagtctaaataaaggttatacctg |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37632103 |
tattgagagacatggataatctgatcactttgtttttgtcacatttgtatgatattagtctaaataaaggttatacctg |
37632025 |
T |
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